PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953655.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 381aa MW: 41837.8 Da PI: 10.4145

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953655.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.3	6.4e-16	68	155	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ r+ +qCk++++ ++k+yk +k+ + + s++p++d+l+ XP_022953655.1 68 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYTKIPRTDIQCKNRIDTVKKKYKTEKAKLTAG--GGPSKWPFYDRLD 155 7***********************************87666677899********************97..67778***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MKEDDEIQSF PSPGSGSPAS PISNGRITVT VAAAAPPPPP SALNTITLAL PIQQSKGGGG 60 GGGGREDCWS EGATSVLIDA WGERYLELSR GNLKQKHWKE VADIVSSRED YTKIPRTDIQ 120 CKNRIDTVKK KYKTEKAKLT AGGGPSKWPF YDRLDLLIGP AASKNSVSIA GVNPPLQPNQ 180 KVPLGIPVVN RPVNPYQAQQ NHNHSQQQQQ KGPKAQKIQY HKRPRTTDSD SSGSDRETSP 240 TSSDSYRQKK VQSKNVRVQK EVVNPKLAQV GKTEKGKNGS REKGWVNAVS ELTQAILKFG 300 EAYEQAESSK LQQVVVMEKQ RMKFAKDLEL QRMQFFMKTQ LEISQLKHGR RVVAAGNHHG 360 SSSNNNNNNN NNNHSNSDSS N

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MKEDDEIQSF PSPGSGSPAS PISNGRITVT VAAAAPPPPP SALNTITLAL PIQQSKGGGG  60
GGGGREDCWS EGATSVLIDA WGERYLELSR GNLKQKHWKE VADIVSSRED YTKIPRTDIQ  120
CKNRIDTVKK KYKTEKAKLT AGGGPSKWPF YDRLDLLIGP AASKNSVSIA GVNPPLQPNQ  180
KVPLGIPVVN RPVNPYQAQQ NHNHSQQQQQ KGPKAQKIQY HKRPRTTDSD SSGSDRETSP  240
TSSDSYRQKK VQSKNVRVQK EVVNPKLAQV GKTEKGKNGS REKGWVNAVS ELTQAILKFG  300
EAYEQAESSK LQQVVVMEKQ RMKFAKDLEL QRMQFFMKTQ LEISQLKHGR RVVAAGNHHG  360
SSSNNNNNNN NNNHSNSDSS N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	65	KGGGGGGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-51	Trihelix family protein