PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953930.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 302aa MW: 34348.4 Da PI: 6.4087

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953930.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.3e-38	38	136	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+e+am+++++++++r dPv G++++i++lq q+e k+el+ XP_022953930.1 38 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSMDPVGGCYRIIRDLQLQIEYIKTELD 132 7********************************************************************************************98 PP DUF260 96 llke 99 + + XP_022953930.1 133 FVLS 136 7765 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MSPITHHNHP HHHHHHHHQL SKPAPSTAST LASATTQACA ACKYQRRKCA PDCILAPYFP 60 HDRQRQFLNA HKLFGVSNIT KIIKNLDPFE KEEAMRTIIF QSDVRSMDPV GGCYRIIRDL 120 QLQIEYIKTE LDFVLSQLAL CKQQAAAAAA VAILESDPMS GYGGLEHQFV EGYGGEGFVV 180 GENENRETLE DQEVEVWGIQ DSCSSLQLKP AGSVQDFHDI KIDTNNTNHH HRHHQQQQQQ 240 QQHLLRFQQD HHDHHDLVHH SEEALLKMDN VMLKESDPIQ QAQDQELKGA VDTLFTFPTC 300 DP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-48	LBD family protein