PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953944.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARR-B

Protein Properties

Length: 558aa MW: 63236.8 Da PI: 5.1004

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953944.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46.7	7.2e-15	259	311	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++W+ e ++F +a+++LG +k Pk il+lm+ ++Ltl +v+ HLQkY+ XP_022953944.1 259 KSRVVWNVERRRKFSDALNKLG--DKCRPKLILKLMNEPCLTLRQVANHLQKYKA 311 68*****************5..889************************85 PP
2	Myb_DNA-binding	22.9	1.9e-07	263	310	3	48
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 W e ++ da ++lG + ++k+I + m+ +tl q+ +++qky+ XP_022953944.1 263 VWNVERRRKFSDALNKLGDKcRPKLILKLMNePCLTLRQVANHLQKYK 310 677777789*******99********999**********7 PP
3	Response_reg	49.4	2.5e-17	25	130	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vd e l ++ l ++l+++ y +v+++ g+ al ++ke+ +Dl++ ++mp+md + +l + e + + +i++++ + + a++al G XP_022953944.1 25 ILVVDHETLSLKHLSSLLREQSY-NVTATGLGSIALSMIKERGdqFDLVMANVSMPDMDSFSFLHVLLEMN--IVVIFMSSVMNLDVATRALAEG 116 89*******************.***********998888******************9966..****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a fl Kp+++++l XP_022953944.1 117 ACYFLQKPISKDDL 130 *********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MQEMSQEMGH WVPDSLPSFA KNLHILVVDH ETLSLKHLSS LLREQSYNVT ATGLGSIALS 60 MIKERGDQFD LVMANVSMPD MDSFSFLHVL LEMNIVVIFM SSVMNLDVAT RALAEGACYF 120 LQKPISKDDL KYVWQHVYRR NRNISKLTHE ANCVEKAKSG KESVGIQNDD TIVLSQSTDE 180 VSINNNCSIN YQLMSYNEEV QNQPTNASYF EGKRLTDDIE GTSKENRVTY YSTPTNFGDT 240 RIDEDNRRMK EYYISSDNKS RVVWNVERRR KFSDALNKLG DKCRPKLILK LMNEPCLTLR 300 QVANHLQKYK AQVESMKKGR ENKLAPRRET SKFNFSVRTQ LPPPLVPKQP HDEANSSTKG 360 GSTSFIGGER FRLIAPRPVP NPTLPVSANF ANHGLIMLDQ NFRHVDSNYY SVPYIINQTT 420 PEVTSSCVFD GTQFSDNPLD VVQQDLTAFK IGNQEAMECN GTSEGIQLMS NNMAFPYSTN 480 LDNIAANFGN EGSQQQSAEY DYLLNFLEDD PHDFDSDLNL SDVDKYSEWL KNTVLENRSG 540 PDSFLGDNTE NFPMGNNP

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MQEMSQEMGH WVPDSLPSFA KNLHILVVDH ETLSLKHLSS LLREQSYNVT ATGLGSIALS  60
MIKERGDQFD LVMANVSMPD MDSFSFLHVL LEMNIVVIFM SSVMNLDVAT RALAEGACYF  120
LQKPISKDDL KYVWQHVYRR NRNISKLTHE ANCVEKAKSG KESVGIQNDD TIVLSQSTDE  180
VSINNNCSIN YQLMSYNEEV QNQPTNASYF EGKRLTDDIE GTSKENRVTY YSTPTNFGDT  240
RIDEDNRRMK EYYISSDNKS RVVWNVERRR KFSDALNKLG DKCRPKLILK LMNEPCLTLR  300
QVANHLQKYK AQVESMKKGR ENKLAPRRET SKFNFSVRTQ LPPPLVPKQP HDEANSSTKG  360
GSTSFIGGER FRLIAPRPVP NPTLPVSANF ANHGLIMLDQ NFRHVDSNYY SVPYIINQTT  420
PEVTSSCVFD GTQFSDNPLD VVQQDLTAFK IGNQEAMECN GTSEGIQLMS NNMAFPYSTN  480
LDNIAANFGN EGSQQQSAEY DYLLNFLEDD PHDFDSDLNL SDVDKYSEWL KNTVLENRSG  540
PDSFLGDNTE NFPMGNNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	272	ERRRKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	9e-40	ARR-B family protein