PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022954041.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 262aa    MW: 29973.8 Da    PI: 6.1493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022954041.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.6e-181966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd  l ++++ +G g+W+++ar+ g++Rt+k+c++rw++yl
   XP_022954041.1 19 KGPWTVEEDAVLFNYIHSHGEGRWNAVARCTGLKRTGKSCRLRWLNYL 66
                     79********************************************97 PP
2Myb_DNA-binding47.73.5e-1572115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
   XP_022954041.1  72 RGNITLQEQLLILDLHFRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 115
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MDVKMRGFTA EEAEEGVRKG PWTVEEDAVL FNYIHSHGEG RWNAVARCTG LKRTGKSCRL  60
RWLNYLRPSV KRGNITLQEQ LLILDLHFRW GNRWSKIAQY LPGRTDNEIK NYWRTRVQKQ  120
AKQLKCDVNS KQFRDAMRYV WMPRLLERIQ ASTDSVTDVV SASTDVVPSL EQTQPSPSRC  180
SWVNPHMTPS TSSSDSVSNK VQLQVFPVSD RMEDFSLVGT GEEEGMMMVV QQGCDGEATN  240
GWIGGGELLE DGFWDGEDMW FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-78MYB family protein