PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022954309.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 709aa MW: 78248.4 Da PI: 10.3458

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022954309.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.9e-09	15	47	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 +W t+E++ll++avk++G ++W++++ +++ R+ XP_022954309.1 15 SWGTWEELLLACAVKRHGFKDWNSVSIEVQ-SRS 47 6****************************9.665 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MADDKDRESE HGTASWGTWE ELLLACAVKR HGFKDWNSVS IEVQSRSSLP HILTTARNCE 60 LKFLDLKRRF TSCQNGAGIA DKVDTSVPWV DELRKLRVAE LRREVQRYDV SINSLQLKVK 120 KLEEEREQGM SDREASTGKP DLKMESRERR SENDKKLFVE PDHRSGINGT VAKPPAVPGE 180 DSDREDFSVN QSNSTGSKSG NRKSTAENDK SETKPELAGS YRPEQNRRAA EPADPQSDDG 240 STDTVVKNST CDISETKKKE TQRVDNSFEL ADSEAQSNGG ETATRESSEV QSSASLTGRM 300 KRKRLLKKEI SGGSSGNEPR RTPAVKSRPF DEVLQMIRAH KHSSLFESRL QSQETEEYKG 360 MVRQHLDLES VQAKINSGSY SSTHAFYRDL LLLFNNVVTF FPKSSRESVA AHELRLLVSI 420 EMKKALQVAQ IDPSPEVVDS SPTIPSQSKG PDLEGSQSLL AKQKSSVPII VCRKRSKISS 480 KLSSTTGLGE KGERSNDDEK LAVDLKSSIK IASTNPVEDQ GTTKDSKVKE KPITGARSMR 540 RSNDSATNSS GPTIKKQNTN SGWKPSSGNE TETPIPIPIP IPDKKKSDTA TLEKKRSAAD 600 FLKRIKQNSP AETTTKRNGR GGSSSSVVNA ATEQKKGSGS KSEKGKERVL AIRQSNDKKR 660 LKEDGSSPSK RSVGRPPKKA AEADPTPIKR AREGVGKEPL KRPKKRARR

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MADDKDRESE HGTASWGTWE ELLLACAVKR HGFKDWNSVS IEVQSRSSLP HILTTARNCE  60
LKFLDLKRRF TSCQNGAGIA DKVDTSVPWV DELRKLRVAE LRREVQRYDV SINSLQLKVK  120
KLEEEREQGM SDREASTGKP DLKMESRERR SENDKKLFVE PDHRSGINGT VAKPPAVPGE  180
DSDREDFSVN QSNSTGSKSG NRKSTAENDK SETKPELAGS YRPEQNRRAA EPADPQSDDG  240
STDTVVKNST CDISETKKKE TQRVDNSFEL ADSEAQSNGG ETATRESSEV QSSASLTGRM  300
KRKRLLKKEI SGGSSGNEPR RTPAVKSRPF DEVLQMIRAH KHSSLFESRL QSQETEEYKG  360
MVRQHLDLES VQAKINSGSY SSTHAFYRDL LLLFNNVVTF FPKSSRESVA AHELRLLVSI  420
EMKKALQVAQ IDPSPEVVDS SPTIPSQSKG PDLEGSQSLL AKQKSSVPII VCRKRSKISS  480
KLSSTTGLGE KGERSNDDEK LAVDLKSSIK IASTNPVEDQ GTTKDSKVKE KPITGARSMR  540
RSNDSATNSS GPTIKKQNTN SGWKPSSGNE TETPIPIPIP IPDKKKSDTA TLEKKRSAAD  600
FLKRIKQNSP AETTTKRNGR GGSSSSVVNA ATEQKKGSGS KSEKGKERVL AIRQSNDKKR  660
LKEDGSSPSK RSVGRPPKKA AEADPTPIKR AREGVGKEPL KRPKKRARR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	701	709	KRPKKRARR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-99	MYB_related family protein