PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022954410.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 563aa MW: 62225.4 Da PI: 9.2384

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022954410.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.3	2.3e-17	272	321	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lre++P + ++K +Ka+ L ++eYI+ Lq XP_022954410.1 272 RSKHSVTEQRRRSKINDRFQKLREIIPRS----DQKRDKASFLLGVIEYIQFLQ 321 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MELPQPPRLR TEGRKPTHDF VSLYGHSTVH QQDHPSQSFQ GGYLKTHDFL RPLERVGKSC 60 AKEEKTISVS TAERAEPPLA TAAHNSSVEC VLPGGIGTYN ISHISYFNQR GVPKPEGSVF 120 SAAQASSTDK SDDNSRCSSL SGSGFTLWEE SAVKKGKTRK ENLGEKAGLR AEPPAKIEQW 180 TVSTERLTQS SSSNHRNSFN SLASSQPPSG QQNRSFGEML KSVVKVSSEE EELDDGKAFV 240 IKKESSPSTA YKGELMMNIG GKCSDQKANT PRSKHSVTEQ RRRSKINDRF QKLREIIPRS 300 DQKRDKASFL LGVIEYIQFL QEKVRKYESS PPQGWYREPA KLIPCRNNCN PAQCYIDQSQ 360 VAKRGPVFLF SGSNEKSMSH SPAFPRCSHN PVESEVSTST AFREADHHPG TANKTTSYQM 420 LQPRNYTPVI SEGERTELQS QMAYNADNKP CEMRSCNTDI AAGGNNLKEP EQSIEGGRIS 480 ISSAYSQGLL KILTQALQRS GVDMSQASIA VQIELGKRTN YRETITRPAI VDDSSRPSER 540 GILGTRGAAA EDLEQAISKK QKT

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MELPQPPRLR TEGRKPTHDF VSLYGHSTVH QQDHPSQSFQ GGYLKTHDFL RPLERVGKSC  60
AKEEKTISVS TAERAEPPLA TAAHNSSVEC VLPGGIGTYN ISHISYFNQR GVPKPEGSVF  120
SAAQASSTDK SDDNSRCSSL SGSGFTLWEE SAVKKGKTRK ENLGEKAGLR AEPPAKIEQW  180
TVSTERLTQS SSSNHRNSFN SLASSQPPSG QQNRSFGEML KSVVKVSSEE EELDDGKAFV  240
IKKESSPSTA YKGELMMNIG GKCSDQKANT PRSKHSVTEQ RRRSKINDRF QKLREIIPRS  300
DQKRDKASFL LGVIEYIQFL QEKVRKYESS PPQGWYREPA KLIPCRNNCN PAQCYIDQSQ  360
VAKRGPVFLF SGSNEKSMSH SPAFPRCSHN PVESEVSTST AFREADHHPG TANKTTSYQM  420
LQPRNYTPVI SEGERTELQS QMAYNADNKP CEMRSCNTDI AAGGNNLKEP EQSIEGGRIS  480
ISSAYSQGLL KILTQALQRS GVDMSQASIA VQIELGKRTN YRETITRPAI VDDSSRPSER  540
GILGTRGAAA EDLEQAISKK QKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-98	bHLH family protein