PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022954820.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family B3
Protein Properties Length: 547aa    MW: 61864.7 Da    PI: 7.0206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022954820.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.7e-1532119297
                     EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     fkv+   d +++  l++p  fa++   ++   +k+++led+ g++W+v++  +++ g+  +++GW+ F +++ L+ gDf++F ++ +   +++v+
  XP_022954820.1  32 FKVM-FGDRFSE-VLYFPPVFASTVsRLV---NKKVVLEDSLGQQWKVTV--SNCEGSLAFREGWSVFSSEHSLEIGDFLTFNHIMD--LHFNVT 117
                     5555.3344444.4999999998886555...468***************..*******************************7754..444777 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_022954820.1 118 IY 119
                     66 PP
2B341.82e-134735422596
                     TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +  +++e+ + + l+d++ r W + +     ++ +vlt+GW+ F++an++++gD ++F+++++ e+ + v+v
  XP_022954820.1 473 RARKNPEKRRLVFLRDPRKRLWPILY--HEMPNVHVLTSGWEAFCSANKIQSGDECLFHVEDELERIYEVRV 542
                     33556778889***************..*******************************8877555466665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MSSEVEACPE CTKRCLHLHR KTNSLSSVTS FFKVMFGDRF SEVLYFPPVF ASTVSRLVNK  60
KVVLEDSLGQ QWKVTVSNCE GSLAFREGWS VFSSEHSLEI GDFLTFNHIM DLHFNVTIYT  120
KTGCEKEFAN KSNMRKRTRS NCPVLETTNE GLTYPQASCP SVGSGSNVAL SQDKCCVTCY  180
RDLNLNLNQD KRPKYQSSNE RNGSLCKADI VDYSYAFINQ NKDVELEENR SPLFDLFSME  240
MQTTNFCVNE ITTKKVAGDE LNPNRASTSL NAAIDVSRIN NARVDIKGDK SQCFEAADIK  300
RSVSDNNPCH DKTIEVPFIT SATNSDRNVE RFCDMPLKSV KDCQNIPAVC DTPSTITRHD  360
HQESNNKHTF PVDHSHGMKL EYPPISLEVK KCPHGDVKKT TKTDMNNYED FIGQISVSKV  420
KEELLEKSNQ SGSDGNDSNA DSIATRAHVS CIVAKDTLSF LELPTSLQSP CSRARKNPEK  480
RRLVFLRDPR KRLWPILYHE MPNVHVLTSG WEAFCSANKI QSGDECLFHV EDELERIYEV  540
RVRKCKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480492KRRLVFLRDPRKR
2481493KRRLVFLRDPRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-14B3 family protein