PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022955141.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 305aa    MW: 34360.1 Da    PI: 8.3239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022955141.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-173279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
   XP_022955141.1 32 KGPWTPEEDIVLVSYIQEHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 79
                     79******************************99************97 PP
2Myb_DNA-binding49.97.1e-1685130148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_022955141.1  85 RGNFTDQEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 130
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MLLLLLLLLC LRNLKAKDMG RPPCCDKNGV KKGPWTPEED IVLVSYIQEH GPGNWRAVPA  60
NTGLLRCSKS CRLRWTNYLR PGIKRGNFTD QEEKMIVHLQ ALLGNRWAAI ASYLPQRTDN  120
DIKNYWNTHL KKKLRKVQVS SMGHFGDGIS STSSSMPRGQ WEKRLQTDIR MARQALWEAL  180
TPQNSAPFGE IKPSYHKVQA TGYASSTENI AKLLTGWMKN PPKTTAERCP NGGSSGGGAD  240
ECEDNMGSFF RFECFETSKS NSEEMKTDPD VHDLPLSMLE KWLFEESGGV LQGRDHDHCL  300
DDIGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-107MYB family protein