PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955143.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 427aa MW: 47218.7 Da PI: 5.4204

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955143.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.5e-12	120	142	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_022955143.1 120 EDCAFYLRTGTCKFGSLCKFNHP 142 78********************9 PP
2	zf-CCCH	21.3	4.6e-07	148	166	7	25
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG Ck+G C+++H XP_022955143.1 148 QYYSRTGGCKFGTACRYNH 166 59***************** PP
3	zf-CCCH	34.2	4.3e-11	191	213	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_022955143.1 191 KECPYYMRTGCCKYGANCKFNHP 213 68********************9 PP
4	zf-CCCH	19.4	1.8e-06	315	341	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_022955143.1 315 PGQPECSYFLKTGDCKFKSLCIYHHPK 341 5789*********************96 PP
5	zf-CCCH	36	1.1e-11	363	387	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G++CkF H++ XP_022955143.1 363 QNVCTYYSRYGICKFGPSCKFDHPM 387 568********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MEPSEAVFVP IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE 60 AAVKDFDGGG EWEVEKNPVE GEGNLEEEVV VVDAGDGGEV EKEGEMRGGN NQYPVRSEAE 120 DCAFYLRTGT CKFGSLCKFN HPLRKRHQYY SRTGGCKFGT ACRYNHTRPR ALPNPILELN 180 FLGLPIRLNE KECPYYMRTG CCKYGANCKF NHPDPTTVAV PESLSGYNNG VLLQGGASQS 240 QITSWTSPRV LNETPTFVPA MISPSQDSEW NAYQAPMYPS EISMLPPPTY AVNNIASGTD 300 LYPSHQQVEE HPERPGQPEC SYFLKTGDCK FKSLCIYHHP KNWNLKLPTC TLNDKGLPLR 360 PDQNVCTYYS RYGICKFGPS CKFDHPMLPA SSTSELKQQP HYSNFNAAEG AEMGGGSGNG 420 VTVEQSA

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MEPSEAVFVP IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE  60
AAVKDFDGGG EWEVEKNPVE GEGNLEEEVV VVDAGDGGEV EKEGEMRGGN NQYPVRSEAE  120
DCAFYLRTGT CKFGSLCKFN HPLRKRHQYY SRTGGCKFGT ACRYNHTRPR ALPNPILELN  180
FLGLPIRLNE KECPYYMRTG CCKYGANCKF NHPDPTTVAV PESLSGYNNG VLLQGGASQS  240
QITSWTSPRV LNETPTFVPA MISPSQDSEW NAYQAPMYPS EISMLPPPTY AVNNIASGTD  300
LYPSHQQVEE HPERPGQPEC SYFLKTGDCK FKSLCIYHHP KNWNLKLPTC TLNDKGLPLR  360
PDQNVCTYYS RYGICKFGPS CKFDHPMLPA SSTSELKQQP HYSNFNAAEG AEMGGGSGNG  420
VTVEQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-112	C3H family protein