PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955214.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 393aa MW: 43390.9 Da PI: 7.9994

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955214.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.5	6.9e-42	88	164	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_022955214.1 88 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQT 164 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MKWKEQTNSL LLHLFGNTFF PFIQLPLSLS FLLSSSPPIS TFLGTSKCQS SWNTVFAETE 60 VEKMASSTSG SSKRARGANN AGSQPVSCLV DGCNSDLSNC RDYHRRHKVC ELHSKTPQVT 120 IGGLKQRFCQ QCSRFHSLEE FDEGKRSCRK RLDGHNRRRR KPQTDLLPRS AGPFSYHQGS 180 HLLAYTSAQV YPSTTVSSHG WSSTGETAAL HRDQQLNFLE KQSLFVEQSD HSNNYKTAQT 240 LAFMHGGPTT TCQPLLRSMN TLSENGGGGG GGGERNKMIY DRFRIGVSES DCALSLLSSP 300 QAQTDHQPQQ QPQPQQAESG SSGHLDLGRI EQHQRSAAVS LLQPLNHHHH SHNSYENSDS 360 DNHGGALNFP GIFGIASENP GNESPSTLPF HWE

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MKWKEQTNSL LLHLFGNTFF PFIQLPLSLS FLLSSSPPIS TFLGTSKCQS SWNTVFAETE  60
VEKMASSTSG SSKRARGANN AGSQPVSCLV DGCNSDLSNC RDYHRRHKVC ELHSKTPQVT  120
IGGLKQRFCQ QCSRFHSLEE FDEGKRSCRK RLDGHNRRRR KPQTDLLPRS AGPFSYHQGS  180
HLLAYTSAQV YPSTTVSSHG WSSTGETAAL HRDQQLNFLE KQSLFVEQSD HSNNYKTAQT  240
LAFMHGGPTT TCQPLLRSMN TLSENGGGGG GGGERNKMIY DRFRIGVSES DCALSLLSSP  300
QAQTDHQPQQ QPQPQQAESG SSGHLDLGRI EQHQRSAAVS LLQPLNHHHH SHNSYENSDS  360
DNHGGALNFP GIFGIASENP GNESPSTLPF HWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	162	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-52	SBP family protein