PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955260.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 345aa MW: 38428.5 Da PI: 7.4576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955260.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq XP_022955260.1 166 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 213 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MAAFSYQYQP FLLDSILQAN NPLKMDGFLD EPNFNINCFT QFFAQEQEQE QPIHRFPDLC 60 KQSPESFSLV EKSDSGEPPV VSQSKPTVTS PCSKKRKSRG NNSSAISAQS KESIGKKVKT 120 KRELDERKEG DEKGKTGKKE EKKASEDGAP TGYIHVRAKR GQATDSHSLA ERVRREKISE 180 RMKTLQRLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLASLNPIL FDFRMDLDGL 240 MIQPESSSLS SITPQLPAMA QCSVISPPTL IDTTTTTTPT PTIATPNSYP LTDNSANLFL 300 LQQVMNPNAY TQSQDNVKVS SLDVEEHKRK LLISSGIGDN LSYFH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MAAFSYQYQP FLLDSILQAN NPLKMDGFLD EPNFNINCFT QFFAQEQEQE QPIHRFPDLC  60
KQSPESFSLV EKSDSGEPPV VSQSKPTVTS PCSKKRKSRG NNSSAISAQS KESIGKKVKT  120
KRELDERKEG DEKGKTGKKE EKKASEDGAP TGYIHVRAKR GQATDSHSLA ERVRREKISE  180
RMKTLQRLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLASLNPIL FDFRMDLDGL  240
MIQPESSSLS SITPQLPAMA QCSVISPPTL IDTTTTTTPT PTIATPNSYP LTDNSANLFL  300
LQQVMNPNAY TQSQDNVKVS SLDVEEHKRK LLISSGIGDN LSYFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	121	KKRKSRGNNSSAISAQSKESIGKKVKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	6e-55	bHLH family protein