PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955350.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 346aa MW: 38316.5 Da PI: 7.4238

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955350.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ +G g+W+++++ g+ R++k+c++rw +yl XP_022955350.1 14 RGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	47.4	4.4e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E l+v+++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_022955350.1 67 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 110 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKMISRE 120 VSALTTFSGH IQNPNVSINN EGFFILNANP NLILTTSARQ DQPCLPTSTL QAGYDLIDYK 180 LQQFTNLNPN ANLVHLLPSF SPSTNLLPHN PPSWQSLGGY RPQSLDSDQL MVASGEFVTP 240 ATTLPQYVDG SIFHPVKLCE VGEENLCSST PQISAPLQDL DPFTKLSSFP NGYYPQDQCL 300 AANQMVMEQI DMIMSSILQI PSCSSSSSLL GLSELSSNLV SSSWGV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKMISRE  120
VSALTTFSGH IQNPNVSINN EGFFILNANP NLILTTSARQ DQPCLPTSTL QAGYDLIDYK  180
LQQFTNLNPN ANLVHLLPSF SPSTNLLPHN PPSWQSLGGY RPQSLDSDQL MVASGEFVTP  240
ATTLPQYVDG SIFHPVKLCE VGEENLCSST PQISAPLQDL DPFTKLSSFP NGYYPQDQCL  300
AANQMVMEQI DMIMSSILQI PSCSSSSSLL GLSELSSNLV SSSWGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	8e-80	MYB family protein