PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955748.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 344aa MW: 37780.5 Da PI: 4.3351

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955748.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.8	5.9e-10	17	59	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+ +e ++q+ C+ + lC+ C e+H+ H++v XP_022955748.1 17 ICEACETAPAQFICKADAASLCAACDAEIHSAnplarrHQRVA 59 8*****************************6688888899876 PP
2	CCT	70.5	4.1e-24	275	318	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_022955748.1 275 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 318 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MLKTEGNHGG NGWGSIICEA CETAPAQFIC KADAASLCAA CDAEIHSANP LARRHQRVAI 60 SRGAMFPTAE EEEEEEEEEE EEEVEVEEQE EEEAASWLLM NPVKNNSGGS NKNTSNNGLF 120 LFGGEEEEAE EEEEYLNFVE FNGNNNGFGN GDEEFEGLKN NYGGGDSVVP IEFEGNKADQ 180 ILLQQSYGGV VDASQFFHSS SKPSYSYNAF LTHAISVSSM EVGVVPESTT AATVSDISIS 240 NMRPPRGTVD LFSGTTAAAA AVVQMPATQL SPMDREARVL RYREKKKTRK FEKTIRYASR 300 KAYAETRPRI KGRFAKRTDV EVELDRKFSN PLTADGGYGI VPFF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MLKTEGNHGG NGWGSIICEA CETAPAQFIC KADAASLCAA CDAEIHSANP LARRHQRVAI  60
SRGAMFPTAE EEEEEEEEEE EEEVEVEEQE EEEAASWLLM NPVKNNSGGS NKNTSNNGLF  120
LFGGEEEEAE EEEEYLNFVE FNGNNNGFGN GDEEFEGLKN NYGGGDSVVP IEFEGNKADQ  180
ILLQQSYGGV VDASQFFHSS SKPSYSYNAF LTHAISVSSM EVGVVPESTT AATVSDISIS  240
NMRPPRGTVD LFSGTTAAAA AVVQMPATQL SPMDREARVL RYREKKKTRK FEKTIRYASR  300
KAYAETRPRI KGRFAKRTDV EVELDRKFSN PLTADGGYGI VPFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	1e-36	CO-like family protein