PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022956067.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 538aa MW: 58028.8 Da PI: 7.6383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022956067.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	351	398	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P++ +k Ka +L + ++Y++sLq XP_022956067.1 351 SHSLAERARREKISKRMKFLQDLVPSC----NKVTGKAVMLDEIINYVQSLQ 398 79**********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MENEFFMSDG CGFSGMEIQP NELNSSGLFT PNWENSMDQS DLFESTLSSI VSSPVNSHAG 60 NVIGGGGGGG DNLMMRELIG RLGSICNSGE ISPHSYIGGT NNNSTNTSCY NTPLNSPPKL 120 NLSSIGGNLI PLHQNLAPFS ADPGFTERAA RFSCFGNRNL AGLNGHLSSN ETLELGAGME 180 SGKLSRVSSN KSFNIGGIGS QMGVQEGEQS PIQKGNSMRI PNKKVLNRFS KSSTPENTGD 240 SPEGSSVSEQ ITGGELGFKG KPEINTRKRK STLAKDLKVA GEKHESNGKK IKPDEASKKE 300 IDAAKGKAEA KDGSKALGVA NPKQKNDNSK PPEPPKDYIH VRAGRGQATD SHSLAERARR 360 EKISKRMKFL QDLVPSCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLTT VNPRMDLNME 420 TLLPKDIFKG PGSSSLTVYP MDSSMPAFAY DYQSMHMPPL HSSISNGTEK QFSVASSSDQ 480 HRNLSAQIPS GYNEVGNGIQ ISKFWEDELH TVVQMGYGQN QLQSSNGSMA ADEMKSER

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MENEFFMSDG CGFSGMEIQP NELNSSGLFT PNWENSMDQS DLFESTLSSI VSSPVNSHAG  60
NVIGGGGGGG DNLMMRELIG RLGSICNSGE ISPHSYIGGT NNNSTNTSCY NTPLNSPPKL  120
NLSSIGGNLI PLHQNLAPFS ADPGFTERAA RFSCFGNRNL AGLNGHLSSN ETLELGAGME  180
SGKLSRVSSN KSFNIGGIGS QMGVQEGEQS PIQKGNSMRI PNKKVLNRFS KSSTPENTGD  240
SPEGSSVSEQ ITGGELGFKG KPEINTRKRK STLAKDLKVA GEKHESNGKK IKPDEASKKE  300
IDAAKGKAEA KDGSKALGVA NPKQKNDNSK PPEPPKDYIH VRAGRGQATD SHSLAERARR  360
EKISKRMKFL QDLVPSCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLTT VNPRMDLNME  420
TLLPKDIFKG PGSSSLTVYP MDSSMPAFAY DYQSMHMPPL HSSISNGTEK QFSVASSSDQ  480
HRNLSAQIPS GYNEVGNGIQ ISKFWEDELH TVVQMGYGQN QLQSSNGSMA ADEMKSER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	271	TRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	6e-60	bHLH family protein