PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022956108.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 1163aa MW: 129158 Da PI: 8.8266

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022956108.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a+ + +R+ +++ XP_022956108.1 46 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6***************99.*****.98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence
MAPSRKSRSV NKRLSSANEA FSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLINCQR 120 DSESEQESNE NSGARRKPQK RLRGKSQNNN SKGLDAHFGD ASQSQSFPTN YGCLSLLKKR 180 RSGIKPHAVG KRTPRIPVSY SYDKDGRERF FSPSRHNSKP RVDDPNDDDV AHEIALVLTE 240 ASQRDGSPQL SQTPNPKIEG HVLSPTRNDR MQSESGMMNT KFRCSEMDEG GCELSLGSTG 300 ADNADYDLGK NSREIQRKGK RYHGKKPEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL 360 ETADLDVKSV RSSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDAN AETEPSAKVK 420 EENLDVMHKS KIKGNHSVAG AEISALKTSK KVKAFGNNVG PILESERIQG SNNGNRKRKL 480 KSSPFKISAK DEVNSDSRVG DTLKIKAADE AKSSVGKVKR SPHNAGLAKS GKLSKPLDHH 540 SSSSTDHKRE DGDYALSTAQ VPSTNPISLP TEVRSRRKMN LWKSQRDSKT SDNTSIDRLN 600 RPAQSIDDRP NDLKEQHSNC LSWHKLRRWC VYEWFYSAID FPWFAKCEFV EYLNHVGLGH 660 IPRLTRVEWG VIRSSLGRPR RFSAQFLKEE KQKLNQYRES VRKHYAELCA GTREGLPTDL 720 ARPLSVGQRV IAIHPKTREI HDGSVLTVDY SRCRVQFDRP ELGVEFVMDI ECMPLNPVEN 780 MPANLSRHGV TLGKIFGNLN EVKINGLLNE AKIEEYMKST SNDKLDSTDG SVFVSPINKL 840 IKQAKVDLGC SNLQAKFGLS ETVGIQQEAS SQSSALAQIQ AKEADVHALS ELSRALSKKE 900 VVVSELKRLN DEVLENQISG DNLLKDSENF KKQYAAVLLQ LNEVNEQVSS ALYCLRQRNT 960 YQGTLPLMFL KPVHDMGDSC SHAQEPSSHV AEIVGSSRAK AQTMIDEAMQ AILALKKGES 1020 NLENIEEAID FVSNRLSVDD LALPTVRSTA ADTSNSPPVS QNHFNVCTSN PSIADHVVGP 1080 KSNGLSDKTE VEIPSELIAH CVATLLMIQK CTERQFPPSD VAQVLDSAVS GLQPCCPQNL 1140 PLYAEIQKCM GIIRSQILAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence

MAPSRKSRSV NKRLSSANEA FSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR  60
KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLINCQR  120
DSESEQESNE NSGARRKPQK RLRGKSQNNN SKGLDAHFGD ASQSQSFPTN YGCLSLLKKR  180
RSGIKPHAVG KRTPRIPVSY SYDKDGRERF FSPSRHNSKP RVDDPNDDDV AHEIALVLTE  240
ASQRDGSPQL SQTPNPKIEG HVLSPTRNDR MQSESGMMNT KFRCSEMDEG GCELSLGSTG  300
ADNADYDLGK NSREIQRKGK RYHGKKPEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL  360
ETADLDVKSV RSSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDAN AETEPSAKVK  420
EENLDVMHKS KIKGNHSVAG AEISALKTSK KVKAFGNNVG PILESERIQG SNNGNRKRKL  480
KSSPFKISAK DEVNSDSRVG DTLKIKAADE AKSSVGKVKR SPHNAGLAKS GKLSKPLDHH  540
SSSSTDHKRE DGDYALSTAQ VPSTNPISLP TEVRSRRKMN LWKSQRDSKT SDNTSIDRLN  600
RPAQSIDDRP NDLKEQHSNC LSWHKLRRWC VYEWFYSAID FPWFAKCEFV EYLNHVGLGH  660
IPRLTRVEWG VIRSSLGRPR RFSAQFLKEE KQKLNQYRES VRKHYAELCA GTREGLPTDL  720
ARPLSVGQRV IAIHPKTREI HDGSVLTVDY SRCRVQFDRP ELGVEFVMDI ECMPLNPVEN  780
MPANLSRHGV TLGKIFGNLN EVKINGLLNE AKIEEYMKST SNDKLDSTDG SVFVSPINKL  840
IKQAKVDLGC SNLQAKFGLS ETVGIQQEAS SQSSALAQIQ AKEADVHALS ELSRALSKKE  900
VVVSELKRLN DEVLENQISG DNLLKDSENF KKQYAAVLLQ LNEVNEQVSS ALYCLRQRNT  960
YQGTLPLMFL KPVHDMGDSC SHAQEPSSHV AEIVGSSRAK AQTMIDEAMQ AILALKKGES  1020
NLENIEEAID FVSNRLSVDD LALPTVRSTA ADTSNSPPVS QNHFNVCTSN PSIADHVVGP  1080
KSNGLSDKTE VEIPSELIAH CVATLLMIQK CTERQFPPSD VAQVLDSAVS GLQPCCPQNL  1140
PLYAEIQKCM GIIRSQILAL IPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	476	506	RKRKLKSSPFKISAKDEVNSDSRVGDTLKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein