PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022956110.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 1159aa MW: 128699 Da PI: 8.8692

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022956110.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a+ + +R+ +++ XP_022956110.1 46 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6***************99.*****.98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence
MAPSRKSRSV NKRLSSANEA FSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES 120 EQESNENSGA RRKPQKRLRG KSQNNNSKGL DAHFGDASQS QSFPTNYGCL SLLKKRRSGI 180 KPHAVGKRTP RIPVSYSYDK DGRERFFSPS RHNSKPRVDD PNDDDVAHEI ALVLTEASQR 240 DGSPQLSQTP NPKIEGHVLS PTRNDRMQSE SGMMNTKFRC SEMDEGGCEL SLGSTGADNA 300 DYDLGKNSRE IQRKGKRYHG KKPEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLETAD 360 LDVKSVRSSF KGPRKRSKKA LFGDECSAFD ALQTLADLSL MMPDANAETE PSAKVKEENL 420 DVMHKSKIKG NHSVAGAEIS ALKTSKKVKA FGNNVGPILE SERIQGSNNG NRKRKLKSSP 480 FKISAKDEVN SDSRVGDTLK IKAADEAKSS VGKVKRSPHN AGLAKSGKLS KPLDHHSSSS 540 TDHKREDGDY ALSTAQVPST NPISLPTEVR SRRKMNLWKS QRDSKTSDNT SIDRLNRPAQ 600 SIDDRPNDLK EQHSNCLSWH KLRRWCVYEW FYSAIDFPWF AKCEFVEYLN HVGLGHIPRL 660 TRVEWGVIRS SLGRPRRFSA QFLKEEKQKL NQYRESVRKH YAELCAGTRE GLPTDLARPL 720 SVGQRVIAIH PKTREIHDGS VLTVDYSRCR VQFDRPELGV EFVMDIECMP LNPVENMPAN 780 LSRHGVTLGK IFGNLNEVKI NGLLNEAKIE EYMKSTSNDK LDSTDGSVFV SPINKLIKQA 840 KVDLGCSNLQ AKFGLSETVG IQQEASSQSS ALAQIQAKEA DVHALSELSR ALSKKEVVVS 900 ELKRLNDEVL ENQISGDNLL KDSENFKKQY AAVLLQLNEV NEQVSSALYC LRQRNTYQGT 960 LPLMFLKPVH DMGDSCSHAQ EPSSHVAEIV GSSRAKAQTM IDEAMQAILA LKKGESNLEN 1020 IEEAIDFVSN RLSVDDLALP TVRSTAADTS NSPPVSQNHF NVCTSNPSIA DHVVGPKSNG 1080 LSDKTEVEIP SELIAHCVAT LLMIQKCTER QFPPSDVAQV LDSAVSGLQP CCPQNLPLYA 1140 EIQKCMGIIR SQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence

MAPSRKSRSV NKRLSSANEA FSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR  60
KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES  120
EQESNENSGA RRKPQKRLRG KSQNNNSKGL DAHFGDASQS QSFPTNYGCL SLLKKRRSGI  180
KPHAVGKRTP RIPVSYSYDK DGRERFFSPS RHNSKPRVDD PNDDDVAHEI ALVLTEASQR  240
DGSPQLSQTP NPKIEGHVLS PTRNDRMQSE SGMMNTKFRC SEMDEGGCEL SLGSTGADNA  300
DYDLGKNSRE IQRKGKRYHG KKPEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLETAD  360
LDVKSVRSSF KGPRKRSKKA LFGDECSAFD ALQTLADLSL MMPDANAETE PSAKVKEENL  420
DVMHKSKIKG NHSVAGAEIS ALKTSKKVKA FGNNVGPILE SERIQGSNNG NRKRKLKSSP  480
FKISAKDEVN SDSRVGDTLK IKAADEAKSS VGKVKRSPHN AGLAKSGKLS KPLDHHSSSS  540
TDHKREDGDY ALSTAQVPST NPISLPTEVR SRRKMNLWKS QRDSKTSDNT SIDRLNRPAQ  600
SIDDRPNDLK EQHSNCLSWH KLRRWCVYEW FYSAIDFPWF AKCEFVEYLN HVGLGHIPRL  660
TRVEWGVIRS SLGRPRRFSA QFLKEEKQKL NQYRESVRKH YAELCAGTRE GLPTDLARPL  720
SVGQRVIAIH PKTREIHDGS VLTVDYSRCR VQFDRPELGV EFVMDIECMP LNPVENMPAN  780
LSRHGVTLGK IFGNLNEVKI NGLLNEAKIE EYMKSTSNDK LDSTDGSVFV SPINKLIKQA  840
KVDLGCSNLQ AKFGLSETVG IQQEASSQSS ALAQIQAKEA DVHALSELSR ALSKKEVVVS  900
ELKRLNDEVL ENQISGDNLL KDSENFKKQY AAVLLQLNEV NEQVSSALYC LRQRNTYQGT  960
LPLMFLKPVH DMGDSCSHAQ EPSSHVAEIV GSSRAKAQTM IDEAMQAILA LKKGESNLEN  1020
IEEAIDFVSN RLSVDDLALP TVRSTAADTS NSPPVSQNHF NVCTSNPSIA DHVVGPKSNG  1080
LSDKTEVEIP SELIAHCVAT LLMIQKCTER QFPPSDVAQV LDSAVSGLQP CCPQNLPLYA  1140
EIQKCMGIIR SQILALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	472	502	RKRKLKSSPFKISAKDEVNSDSRVGDTLKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein