PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022956786.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 294aa    MW: 32940.2 Da    PI: 6.8148
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022956786.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.12.8e-13228252226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ + ++G C+yG+ C+FaHg
  XP_022956786.1 228 KTELCKKWEESGGCPYGEHCRFAHG 252
                     9***********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MEDDMCPPLP SSLSSSAEAS PNSPEPENLC TLHFVSMYHS IFPPLLSSSS LSLTPSPSSS  60
ADDDFNNPCT AAPTSTTDDL LFQARLILEH RELCQRHDLC LRRLRQVTDD VDCLRRENAQ  120
LRLANAELIE ILSSKTAVDD LVGIPNSHLQ SLIGEGQNGE EVGYEIISPT SVIRKYNNQF  180
DGRNNRRRTS LPKSISVRSA AAAAPLNIQS RRVCGPVELE VYKQGMEKTE LCKKWEESGG  240
CPYGEHCRFA HGVEELRPVI RHPRYKTQIC RMVLSGEKCC YGHRCHFRHS LTHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-56C3H family protein