PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022956848.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 27926.9 Da PI: 4.6447

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022956848.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	46	98	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t +q++ Le+ F+ ++++ +e++ ++A+++gL rqV vWFqNrRa+ k XP_022956848.1 46 KRRLTLDQVRMLERTFNAENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSK 98 568999*********************************************99 PP
2	HD-ZIP_I/II	118.1	4.7e-38	45	136	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl+ +qv++LE++F++e+kLe+erKv++a+e+gl+prqvavWFqnrRAR ktk++E dye+L ++yd+lk++ ++L k ++eL++e+++ XP_022956848.1 45 KKRRLTLDQVRMLERTFNAENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKNDFDSLLKVNHELKAEVNQ 136 9**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MDSDTTHCLP LPESLPSLWI SDSCSSMEGE FSQPQAKADR NRGGKKRRLT LDQVRMLERT 60 FNAENKLEHE RKVQIAEEIG LRPRQVAVWF QNRRARSKTK KIEIDYESLN AEYDKLKNDF 120 DSLLKVNHEL KAEVNQLRDK WAATEKMNNP YEPVGALYKV EMGSSRQEQG SRSSSKSDVF 180 YAESPTRENQ SRSGNFLRDE EEDDELGYLG ILEDELSADE LMDSFNVMSS AAEDQSFCFW 240 SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-34	HD-ZIP family protein