PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022956908.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

YABBY

Protein Properties

Length: 192aa MW: 21648.9 Da PI: 8.5886

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022956908.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	129.6	4.2e-40	12	146	25	165
YABBY 25 svPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.vir 117 vP +sl++ vtv CGhC+sllsvn+ a+ l s l+++l +e e+ ++ k ++ +s+ + s ++ e+ +p +pp v + XP_022956908.1 12 CVPCSSLSMEVTVTCGHCSSLLSVNMLRATlVPLHFLSSLSRNLPKEACREM----SSGKLFDSFIRSNLKF-SEYE---VEEGLIPVTPPsVHK 98 69*******************99876652223334444344433333333....2222222222222222.2212...2333455555559 PP YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 PPekrqrvPsayn+fik+ei+r+ka+nP+++h+eaf +aaknWa fP+ XP_022956908.1 99 PPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPP 146 **********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MCNVESAPPF CCVPCSSLSM EVTVTCGHCS SLLSVNMLRA TLVPLHFLSS LSRNLPKEAC 60 REMSSGKLFD SFIRSNLKFS EYEVEEGLIP VTPPSVHKPP EKRQRVPSAY NCFIKDEIRR 120 LKAENPQMTH KEAFRTAAKN WANFPPTIQQ KEDPQNTQIP EVKTQSLRSE VMISNQLFKP 180 ITPNGKQNTN HS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	6e-36	YABBY family protein