PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022956962.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family YABBY
Protein Properties Length: 179aa    MW: 19767.4 Da    PI: 9.3587
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022956962.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY144.79.8e-45101591163
           YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     +d+++  +++Cyv+CnfCnt+lav +P   l+++vtv+CG C++l  ++ +   q +   +           + l ++ +   s+++++ ++ +s
  XP_022956962.1  10 MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQRIDH-----------HPLTFQPQVGFSYDTRKGASISS 93 
                     5788999************************************986655444444333333...........34455555555666666666665 PP

           YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                     +ss+  s++  +e p +  v++PPek+ r Psayn+f+keeiqrika+nP+i hreafsaaaknWa +
  XP_022956962.1  94 TSSS--SSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 159
                     5553..3444556666667***********************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MSSSQDKSSM DLVQPNDHLC YVKCNFCNTL LAVGIPCRRL LETVTVKCGN CSNLSFLSTR  60
PPLQGQRIDH HPLTFQPQVG FSYDTRKGAS ISSTSSSSSS MPNEPPSPNF VVKPPEKKHR  120
LPSAYNCFMK EEIQRIKAAN PEIPHREAFS AAAKNWARYI PNSAAGSVSG TPNDVRKRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-60YABBY family protein