PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957228.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 462aa MW: 51929.2 Da PI: 8.5311

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957228.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.6	1e-39	172	248	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ d+s++k+y+r+h+vCe hsk+p+v++ g e+rfCqqCsrfh++sefD +krsCrrrL++hn+rrrk+q+ XP_022957228.1 172 CQVEGCNIDISNVKDYYRKHRVCESHSKSPKVIIGGFERRFCQQCSRFHSISEFDGKKRSCRRRLSNHNARRRKPQS 248 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MEWNARPPLQ WDWDNLTVLN PRYSEHGDVL HPTIFQTKHG INFGPSNSAG DDRTTGGPFF 60 KLGQTSPKIS KSVSTNSSSF EKSRTTKFTL EGFEPTLEDS CNKKEFVEAE VVSTYGTPET 120 STCSCEPMLS LKLGKQAYFE NASAVNLTKP SALMVESRAT RKRGQNTPSA HCQVEGCNID 180 ISNVKDYYRK HRVCESHSKS PKVIIGGFER RFCQQCSRFH SISEFDGKKR SCRRRLSNHN 240 ARRRKPQSKV VSLNPARLSS WDFENRQIDI FSDKLSLIYP TPNEKSAWES AFSSRHPQCG 300 KYISKPEPTY GSIGQLNVSG DEMCYVHAMP YHDNTSKAVP FKGAATKILD PAQDLQRALS 360 LLSTDTKGPY EARLFAPDNP NRLVNPNYAN QPSISQSPLN LEIQTLPFAS VDSQSWGNGH 420 HHPIELQMQI HHPNIEGGNN LFQDFQVFKT PCEIGMFSNQ IS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MEWNARPPLQ WDWDNLTVLN PRYSEHGDVL HPTIFQTKHG INFGPSNSAG DDRTTGGPFF  60
KLGQTSPKIS KSVSTNSSSF EKSRTTKFTL EGFEPTLEDS CNKKEFVEAE VVSTYGTPET  120
STCSCEPMLS LKLGKQAYFE NASAVNLTKP SALMVESRAT RKRGQNTPSA HCQVEGCNID  180
ISNVKDYYRK HRVCESHSKS PKVIIGGFER RFCQQCSRFH SISEFDGKKR SCRRRLSNHN  240
ARRRKPQSKV VSLNPARLSS WDFENRQIDI FSDKLSLIYP TPNEKSAWES AFSSRHPQCG  300
KYISKPEPTY GSIGQLNVSG DEMCYVHAMP YHDNTSKAVP FKGAATKILD PAQDLQRALS  360
LLSTDTKGPY EARLFAPDNP NRLVNPNYAN QPSISQSPLN LEIQTLPFAS VDSQSWGNGH  420
HHPIELQMQI HHPNIEGGNN LFQDFQVFKT PCEIGMFSNQ IS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	245	KKRSCRRRLSNHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	5e-45	SBP family protein