PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022957254.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 215aa    MW: 23506.5 Da    PI: 4.7075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022957254.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.21.7e-35171171100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+ap f  ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA  r+rdP +G+v +i++lqq++++l++e+
  XP_022957254.1  17 SCGACKFLRRKCSDQCVFAPLFSYDEaTSHFAAVHKVFGASNVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEI 111
                     6**********************98868******************************************************************* PP

          DUF260  95 allkee 100
                     + l+++
  XP_022957254.1 112 QILGTQ 117
                     998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTVLNSYDSS SSSSSSSCGA CKFLRRKCSD QCVFAPLFSY DEATSHFAAV HKVFGASNVS  60
KLLLHLPMHV RTQAAITVTY EALERMRDPA NGCVLHIFAL QQEVASLQEE IQILGTQIAN  120
LLTTGAAISA VENPFIEMND FGMNSNHCQN ELPSQLLPYR TSDDVQKDDQ MISPLLCLGE  180
KDGGFGFCHS NHVVETSGFD VSVEENFGGY PWILG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.18e-54LBD family protein