PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957636.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 214aa MW: 24441.3 Da PI: 9.8901

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957636.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.2	7e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRrng+lKKA+ELSvLCdaev+v+ifs++g+lye+ss XP_022957636.1 9 KRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSS 59 79***********************************************96 PP
2	K-box	56	1.7e-19	80	171	8	98
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +e +++++qe++ k++e+L+++q++llG +L+s+sl+e++++e+qL sl++iR++K++l++eq +l +k k l een +L +k XP_022957636.1 80 AlRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLGSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKC 171 34678889********************************************************************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MVRGKVEMKR IENATNRQVT FSKRRNGLLK KAYELSVLCD AEVSVMIFSQ KGRLYEFSST 60 DIHKSIQRYR WYGKDGQTNA LRSEVYMQQM KQEADMTAKK MEQLETSQKK LLGRGLGSCS 120 LEEIREIETQ LILSLTRIRE RKSQLFKEQR MKLIEKGKLL IEENIKLAAK CGTQPWEAEG 180 GGENEGGGIM SLLCTQNAQP SHINTKLFIG LPCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	2e-78	MIKC_MADS family protein