PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022957809.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family YABBY
Protein Properties Length: 237aa    MW: 26238.6 Da    PI: 8.6184
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022957809.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY227.92.6e-70271942170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh...ldeslkeelleelkveeenlksnvekeesas 93 
                     ++  s+eq+Cyv+Cn C+t+lavsvP +slfk+vtvrCGhCt+ll vn++    ll++ ++   l++s+  + ++ l++  +  + + +++ +a+
  XP_022957809.1  27 HHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGL--LLPSANQfhqLGHSFFSPSHNILENIPTPNSNYLINQFAAT 119
                     67889*****************************************777665..55555540015566555533333333333222333333333 PP

           YABBY  94 tsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++   + + s+   +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl
  XP_022957809.1 120 NT---FGMpSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 194
                     33...3332778899****999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MSSSSSSPTS STTTTTQQQQ QQQQLDHHLP SPEQLCYVHC NICDTVLAVS VPCSSLFKTV  60
TVRCGHCTNL LPVNMRGLLL PSANQFHQLG HSFFSPSHNI LENIPTPNSN YLINQFAATN  120
TFGMPSRGVA DELPRPPVIN RPPEKRQRVP SAYNRFIKDE IQRIKSVNPD ISHREAFSAA  180
AKNWAHFPHI HFGLMPDQTV KKTNIRQQEG DHGSVVMKDN GFYAAAAASP NVGVSHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-80YABBY family protein