PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957888.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 668aa MW: 72941.8 Da PI: 7.2871

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957888.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.1	1.8e-31	103	187	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m++++r++ lk+plW+evs+k+ e g++rs+k+Ckek+en++k+yk++keg+++r ++ +t+++f+qlea XP_022957888.1 103 RWPRQETLALLRIRSDMDSAFRDATLKGPLWDEVSRKLTELGYNRSAKKCKEKFENVQKYYKRTKEGRGGR--QDGKTYKFFTQLEA 187 8******************************************************************98..56667*****85 PP
2	trihelix	105.3	4.2e-33	500	585	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+kqevlaLi++r +e+r++++ k+ lWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpyf++l+a XP_022957888.1 500 RWPKQEVLALIKLRGGLETRYQETGPKGLLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFNELDA 585 8*******************************************************************8.78999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MEPAAEPGSG SGSGLELPPS QSQFTVSPPD ITTPSLTVDA TTDSQHVEVA SPISSRPPAS 60 SSLNYEEIFR LSTTVQMPVV GDDEGLAGDD ADRTTGSSGA GNRWPRQETL ALLRIRSDMD 120 SAFRDATLKG PLWDEVSRKL TELGYNRSAK KCKEKFENVQ KYYKRTKEGR GGRQDGKTYK 180 FFTQLEALHN ASASASASAA ASTPNVAVSC FSAPPIGFGI SNPTPISSVK ISSTVISSQT 240 PMGIYSPADH FTVRPPPVTA PMGVSFSSNT SSASTEEDDD DEEEMGFDVD LEGEPSSVAG 300 TSRKRRRGVV KGSGSKTHKM MMEFFEGLMK EVMHKQEVMQ QKFLEAMGKR EQDRMIREET 360 WKRQEMARLS REQERMAQER TISASRDAAI IAFLQKFTGQ TIQLPVVNIP SSVAPHHQHQ 420 QHDVPVPMPV PVPVSVPVPL SPVPPPPLQP QTALSLQQNK KTAQDQNPPP SNTLSPLDQP 480 MPYQEISQGG DGSAEPFSSR WPKQEVLALI KLRGGLETRY QETGPKGLLW EEISAGMQRM 540 GYKRSAKRCK EKWENINKYF KKVKESNKKR REDSKTCPYF NELDALYRKK ILGSSSGGGG 600 SDGGGSGSRS SFSDTSKTEQ DPIKNMDTKM ALSTATETSQ TILTEGLSAS LFGEGTEEQP 660 ATSTKKTL

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MEPAAEPGSG SGSGLELPPS QSQFTVSPPD ITTPSLTVDA TTDSQHVEVA SPISSRPPAS  60
SSLNYEEIFR LSTTVQMPVV GDDEGLAGDD ADRTTGSSGA GNRWPRQETL ALLRIRSDMD  120
SAFRDATLKG PLWDEVSRKL TELGYNRSAK KCKEKFENVQ KYYKRTKEGR GGRQDGKTYK  180
FFTQLEALHN ASASASASAA ASTPNVAVSC FSAPPIGFGI SNPTPISSVK ISSTVISSQT  240
PMGIYSPADH FTVRPPPVTA PMGVSFSSNT SSASTEEDDD DEEEMGFDVD LEGEPSSVAG  300
TSRKRRRGVV KGSGSKTHKM MMEFFEGLMK EVMHKQEVMQ QKFLEAMGKR EQDRMIREET  360
WKRQEMARLS REQERMAQER TISASRDAAI IAFLQKFTGQ TIQLPVVNIP SSVAPHHQHQ  420
QHDVPVPMPV PVPVSVPVPL SPVPPPPLQP QTALSLQQNK KTAQDQNPPP SNTLSPLDQP  480
MPYQEISQGG DGSAEPFSSR WPKQEVLALI KLRGGLETRY QETGPKGLLW EEISAGMQRM  540
GYKRSAKRCK EKWENINKYF KKVKESNKKR REDSKTCPYF NELDALYRKK ILGSSSGGGG  600
SDGGGSGSRS SFSDTSKTEQ DPIKNMDTKM ALSTATETSQ TILTEGLSAS LFGEGTEEQP  660
ATSTKKTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	307	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	7e-45	Trihelix family protein