PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022958026.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARR-B

Protein Properties

Length: 539aa MW: 60456.1 Da PI: 4.8006

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022958026.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88	8.6e-28	303	356	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++W+peLH++F++aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR+ XP_022958026.1 303 KTKVDWSPELHRKFIQAVEQL-GIDRAIPSKILELMKVEGLTRHNVASHLQKYRM 356 6799***************.******************************8 PP
2	Myb_DNA-binding	42.2	1.9e-13	306	355	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W++e++ ++++av+qlG + +++I + m +g+t+ ++ s++qky+ XP_022958026.1 306 VDWSPELHRKFIQAVEQLGIDraIPSKILELMKvEGLTRHNVASHLQKYR 355 57***********************************************7 PP
3	Response_reg	26.3	3.7e-10	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d + + +++ le+ +y +v ++d +eal ++ + +++ +l + + e +k + +++ +lpii+ ++ +++ +++ +G XP_022958026.1 20 VLLLDRDGHSAAEITSTLEEMEY-VVCYCSDEKEALSTILNTPenFHVAILEMCKGN--YDESFKLLGSSK-DLPIIMTSDVYCLSTMMKCIALG 110 56667777777889999****.***********665555999999866555..558889897766.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ XP_022958026.1 111 AVEFLLKPLSEDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MVCTADDLQE WKDFPKGLRV LLLDRDGHSA AEITSTLEEM EYVVCYCSDE KEALSTILNT 60 PENFHVAILE MCKGNYDESF KLLGSSKDLP IIMTSDVYCL STMMKCIALG AVEFLLKPLS 120 EDKLRNIWQH VLHKAFSSTP KPEVDSAASL MQLQLESEDN NGVLEDTEVL SWIQDVVWEQ 180 EKPEGSGISQ LNQGSSLQGC WESENQMNCP METDSSDKDV QSNFIETTSH DLVCEDTLQE 240 GQPRLSGKVM LEGDRNFVVG LNAESDLYLP LQNKSGVKSG PSAAEHSIQG SDVNPSASSK 300 ARKTKVDWSP ELHRKFIQAV EQLGIDRAIP SKILELMKVE GLTRHNVASH LQKYRMQRKH 360 VMHREENPTR YSMQTNHSPP IMAYPSSYPY CGISMSTVYR TWTQTNGHPA NVNMRGPPPD 420 YRYWPQPGTQ PWNSYAGMQA DAWGCPVMLP SRAPYFSYPQ QSSSSHNVYT ANKSYGTPQS 480 SFDLQPDEEV IDEIVNEVMR KPRSSLPLGL KPPAEILVEE LPRQGISTLT PQINAFNPP

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MVCTADDLQE WKDFPKGLRV LLLDRDGHSA AEITSTLEEM EYVVCYCSDE KEALSTILNT  60
PENFHVAILE MCKGNYDESF KLLGSSKDLP IIMTSDVYCL STMMKCIALG AVEFLLKPLS  120
EDKLRNIWQH VLHKAFSSTP KPEVDSAASL MQLQLESEDN NGVLEDTEVL SWIQDVVWEQ  180
EKPEGSGISQ LNQGSSLQGC WESENQMNCP METDSSDKDV QSNFIETTSH DLVCEDTLQE  240
GQPRLSGKVM LEGDRNFVVG LNAESDLYLP LQNKSGVKSG PSAAEHSIQG SDVNPSASSK  300
ARKTKVDWSP ELHRKFIQAV EQLGIDRAIP SKILELMKVE GLTRHNVASH LQKYRMQRKH  360
VMHREENPTR YSMQTNHSPP IMAYPSSYPY CGISMSTVYR TWTQTNGHPA NVNMRGPPPD  420
YRYWPQPGTQ PWNSYAGMQA DAWGCPVMLP SRAPYFSYPQ QSSSSHNVYT ANKSYGTPQS  480
SFDLQPDEEV IDEIVNEVMR KPRSSLPLGL KPPAEILVEE LPRQGISTLT PQINAFNPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.5	7e-89	ARR-B family protein