PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022958078.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 267aa    MW: 30576.1 Da    PI: 6.5044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022958078.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l++ +   G  +W+++++  g++R++k+c++rw +yl
   XP_022958078.1 14 KGPWTADEDNKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.17.3e-1770112448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++l
   XP_022958078.1  70 LSEAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTHL 112
                      5899***************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAD EDNKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HLKKKLIKMG  120
IDPVTHEPLQ KQPEDKKNEC LNPNNNKKTK KTAESSAGNH HCKEENESVM DNSSSPAKTE  180
NSSSVNTDES LLLDNLINTS FWIEEEALWN NNDNNNHPSG YGGNFSWEEN WSWLHECEDF  240
GIHDFGFDCF NDFELNAINT TETEGKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.14e-93MYB family protein