PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022958105.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family NF-YC
Protein Properties Length: 222aa    MW: 25118.2 Da    PI: 9.6786
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022958105.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.76.1e-14111201999
           NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     + e++ + k  ++P+ rikki + ++   +i  ea  l+ ka e+f+l++   ++  +   ++++l    ++++v++ + +dfl d vp++
  XP_022958105.1 111 DEEEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK 201
                     456666778889***********9999999**********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MASTERSSTE IKSKEAGTSK PPTKTKTLNA RKSDKNESKK KKKKIYSNKH SNNGSVKDDD  60
AVFISAPGSA SEEEDAGEDR AETTSKKAKT SKSKVGKWNH VKKEENGYAE DEEEEVQEKI  120
YTFPMQRIKK ITRDENSDFR INQEALFLVN KATEMFLLQF CKDAYACCAR DRKKSLAYKH  180
LSSVVSKRKR YDFLSDFVPE KLKFEDAVKE IGMAESGKGE AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172190RKKSLAYKHLSSVVSKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-31NF-YC family protein