PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022958220.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SRS

Protein Properties

Length: 364aa MW: 38054 Da PI: 7.5403

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022958220.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.6	1.3e-67	143	300	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s t++CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq + +a++ a +sa+++ +k++r +++++s+t++s+++++ XP_022958220.1 143 SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKQRLI---ASQTTSRTSTSNTTPP 234 57899*******************************************99988888888887777777777765...6667778888999999 PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++l+tss lP +v+++avf+cvrv++vddg++e+aYq++v+igGh+fkG+LydqG+e XP_022958220.1 235 RSLDTSSshqdagfpeaLPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVE 300 9999999999****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MWSAAAASQR SLNYGLGSEM SMVGLRDVFV VAPASSFNPN PHHHDNNLLS DPHSLAVSNS 60 ATALGVGVIP LLTAGPCLGV EEDNLLSNRS SNRGGGIQLW QQNHYLKKMP SSLDHHLHNP 120 SAANNGLIDD GIGITGGLAS SSSATTTCQD CGNQAKKDCS HRRCRTCCRS RGFDCTTHVK 180 STWVPAARRR ERQLMGVTAN AAAGSSASTS GAKKQRLIAS QTTSRTSTSN TTPPRSLDTS 240 SSHQDAGFPE ALPGQVRAPA VFKCVRVTAV DDGDDEYAYQ AVVKIGGHIF KGFLYDQGVE 300 PGDEFPNVSE LHLGDGGGIT RNNRNGVSSS SPLVDPSDVY NAAATGGGGA PCFLGGSNYG 360 NQIS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MWSAAAASQR SLNYGLGSEM SMVGLRDVFV VAPASSFNPN PHHHDNNLLS DPHSLAVSNS  60
ATALGVGVIP LLTAGPCLGV EEDNLLSNRS SNRGGGIQLW QQNHYLKKMP SSLDHHLHNP  120
SAANNGLIDD GIGITGGLAS SSSATTTCQD CGNQAKKDCS HRRCRTCCRS RGFDCTTHVK  180
STWVPAARRR ERQLMGVTAN AAAGSSASTS GAKKQRLIAS QTTSRTSTSN TTPPRSLDTS  240
SSHQDAGFPE ALPGQVRAPA VFKCVRVTAV DDGDDEYAYQ AVVKIGGHIF KGFLYDQGVE  300
PGDEFPNVSE LHLGDGGGIT RNNRNGVSSS SPLVDPSDVY NAAATGGGGA PCFLGGSNYG  360
NQIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	3e-64	SRS family protein