PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022958264.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GATA

Protein Properties

Length: 535aa MW: 59856.2 Da PI: 7.2197

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022958264.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.3	1.2e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_022958264.1 7 CCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 99************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLVNYTPLHA RADPDEYENH 60 RVKSISINKN KEVKLLKRKL QQADGSIGWT IPDQSQGYYR VVDEDTSNRS SSGSAISNPE 120 SCAHFSSADA SDLTGPAQSI VWEAMVPSRK RTCVNRPKQS PVEKLTKDLY GILCEQRSSY 180 FSEASEEDLL FESEKPMVSV EIGHGSILIR HPSSIAREEE SEASSVSVDH KQYLVNEVYS 240 PHSATVLVCS ENKGMNFPPS RIGKMKNPSG SGVQQVQIKR DDSHHESAQI LGSHNSPLCD 300 VDINDIINFG EFVKQLTNEE QQQLMKYLPQ IDIAELPETL KSMFDSPYFK ESLTSFQQLL 360 REGVFDASFL GTMIEDCTTL KRLVLCNSSK SKWVERYHQL KKRKNDGEGS FLSNANTSVS 420 SNFMNVKRLR ESYNQNVPEV KTIMKSPKRL VMKENKNPGE NDGSCFSPRS LFALPTDGSF 480 EYLQFIERSS DQDLLLDVRS NNSFPQAELL HPTSRTGGRQ ASTCSSSVHP NLVHH

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLVNYTPLHA RADPDEYENH  60
RVKSISINKN KEVKLLKRKL QQADGSIGWT IPDQSQGYYR VVDEDTSNRS SSGSAISNPE  120
SCAHFSSADA SDLTGPAQSI VWEAMVPSRK RTCVNRPKQS PVEKLTKDLY GILCEQRSSY  180
FSEASEEDLL FESEKPMVSV EIGHGSILIR HPSSIAREEE SEASSVSVDH KQYLVNEVYS  240
PHSATVLVCS ENKGMNFPPS RIGKMKNPSG SGVQQVQIKR DDSHHESAQI LGSHNSPLCD  300
VDINDIINFG EFVKQLTNEE QQQLMKYLPQ IDIAELPETL KSMFDSPYFK ESLTSFQQLL  360
REGVFDASFL GTMIEDCTTL KRLVLCNSSK SKWVERYHQL KKRKNDGEGS FLSNANTSVS  420
SNFMNVKRLR ESYNQNVPEV KTIMKSPKRL VMKENKNPGE NDGSCFSPRS LFALPTDGSF  480
EYLQFIERSS DQDLLLDVRS NNSFPQAELL HPTSRTGGRQ ASTCSSSVHP NLVHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-150	GATA family protein