PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022958538.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 512aa MW: 57489.3 Da PI: 7.5277

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022958538.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl XP_022958538.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ XP_022958538.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRRPN 120 SIASATTSMT TTTVPTTNTE HIQLSSNPHQ LNFLTQDLTT KQLSLHQETL FPTLSCPLFT 180 FNTSSQELFH DTLSLNPDTT TTTWHLNHQY HHHHHHHQFL SAVLDPQIEL GATTTGATSV 240 VNTTNSYLPP LIENIESLVG MDDEGEMALE CLQRQDVNDW VVESSQPQNS NFLFWENVEG 300 SLGGEEVIAP TSNSGFFVAA DSSARAVADH FVKMIIPEKN RREISKYLFQ EGVCYAKKDF 360 NLAKHPEIDV PNLQVIKLMQ SFKSKEYVRE TFAWMHYYWY LTNDGIEFLR TYLNLPSEIV 420 PATLKKQAKP AGRPFGGPSG DRPRPSRFDG ERRFGGDRDG YRGGPRGSGG DFGDKGGAPA 480 DYRPSFGGPG GRSGFGRGAG GYGGAPAPSN LE

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRRPN  120
SIASATTSMT TTTVPTTNTE HIQLSSNPHQ LNFLTQDLTT KQLSLHQETL FPTLSCPLFT  180
FNTSSQELFH DTLSLNPDTT TTTWHLNHQY HHHHHHHQFL SAVLDPQIEL GATTTGATSV  240
VNTTNSYLPP LIENIESLVG MDDEGEMALE CLQRQDVNDW VVESSQPQNS NFLFWENVEG  300
SLGGEEVIAP TSNSGFFVAA DSSARAVADH FVKMIIPEKN RREISKYLFQ EGVCYAKKDF  360
NLAKHPEIDV PNLQVIKLMQ SFKSKEYVRE TFAWMHYYWY LTNDGIEFLR TYLNLPSEIV  420
PATLKKQAKP AGRPFGGPSG DRPRPSRFDG ERRFGGDRDG YRGGPRGSGG DFGDKGGAPA  480
DYRPSFGGPG GRSGFGRGAG GYGGAPAPSN LE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	2e-86	MYB family protein