PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022958803.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 477aa MW: 51126.3 Da PI: 6.2323

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022958803.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.9	2.3e-15	292	337	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_022958803.1 292 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 337 9**********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MSQCVPNWDI SDPPPSAAAA ADRLPYHSSS AADDVVPMFE YEVAELTWEN GQLAMHGLGL 60 PRVTGKIHHG GGGGGGDGSK YTWENKPARA SGTLEYLVNQ GTRHGKIGFD VNTDDAGGGG 120 NDLVPWFSDH HKQTLQTPAA SAATTMDAMV PCDGDKSAAG GAGKATVESS DTPAVGLEDE 180 DGRVTKRGRV VARAVHAERE WSVCQNQISV SGSDATLNTH DRNFAATASA TTSHGSLDNT 240 SSGKRCVNTT TDDHDSVCHS TYQVEEEDEG DRNKENPKSS ISTKRSRAAA IHNQSERKRR 300 DKINQRMKTL QKLVPNSNKT DKASMLDEVI EYLKQLQAQI QMMSRINMPM MLPMAAMQQQ 360 LPMASLMATP MGLGMGMAGM GMGMALGIDH LNMMATRSSL AAGMSPMLHP TAFMPMAAWD 420 GGTYDQRQPS PSTMIADPVS AFLACQSQPM TMEAYSRIAT VFQQMNQQQP TVGGSKN

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MSQCVPNWDI SDPPPSAAAA ADRLPYHSSS AADDVVPMFE YEVAELTWEN GQLAMHGLGL  60
PRVTGKIHHG GGGGGGDGSK YTWENKPARA SGTLEYLVNQ GTRHGKIGFD VNTDDAGGGG  120
NDLVPWFSDH HKQTLQTPAA SAATTMDAMV PCDGDKSAAG GAGKATVESS DTPAVGLEDE  180
DGRVTKRGRV VARAVHAERE WSVCQNQISV SGSDATLNTH DRNFAATASA TTSHGSLDNT  240
SSGKRCVNTT TDDHDSVCHS TYQVEEEDEG DRNKENPKSS ISTKRSRAAA IHNQSERKRR  300
DKINQRMKTL QKLVPNSNKT DKASMLDEVI EYLKQLQAQI QMMSRINMPM MLPMAAMQQQ  360
LPMASLMATP MGLGMGMAGM GMGMALGIDH LNMMATRSSL AAGMSPMLHP TAFMPMAAWD  420
GGTYDQRQPS PSTMIADPVS AFLACQSQPM TMEAYSRIAT VFQQMNQQQP TVGGSKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	ERKRRD
2	297	302	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	8e-90	bHLH family protein