PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022958804.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 464aa MW: 49798.9 Da PI: 6.1497

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022958804.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.2e-15	279	324	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_022958804.1 279 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 324 9**********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MSQCVPNWDI SDPPPSAAAD DVVPMFEYEV AELTWENGQL AMHGLGLPRV TGKIHHGGGG 60 GGGDGSKYTW ENKPARASGT LEYLVNQGTR HGKIGFDVNT DDAGGGGNDL VPWFSDHHKQ 120 TLQTPAASAA TTMDAMVPCD GDKSAAGGAG KATVESSDTP AVGLEDEDGR VTKRGRVVAR 180 AVHAEREWSV CQNQISVSGS DATLNTHDRN FAATASATTS HGSLDNTSSG KRCVNTTTDD 240 HDSVCHSTYQ VEEEDEGDRN KENPKSSIST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL 300 VPNSNKTDKA SMLDEVIEYL KQLQAQIQMM SRINMPMMLP MAAMQQQLPM ASLMATPMGL 360 GMGMAGMGMG MALGIDHLNM MATRSSLAAG MSPMLHPTAF MPMAAWDGGT YDQRQPSPST 420 MIADPVSAFL ACQSQPMTME AYSRIATVFQ QMNQQQPTVG GSKN

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MSQCVPNWDI SDPPPSAAAD DVVPMFEYEV AELTWENGQL AMHGLGLPRV TGKIHHGGGG  60
GGGDGSKYTW ENKPARASGT LEYLVNQGTR HGKIGFDVNT DDAGGGGNDL VPWFSDHHKQ  120
TLQTPAASAA TTMDAMVPCD GDKSAAGGAG KATVESSDTP AVGLEDEDGR VTKRGRVVAR  180
AVHAEREWSV CQNQISVSGS DATLNTHDRN FAATASATTS HGSLDNTSSG KRCVNTTTDD  240
HDSVCHSTYQ VEEEDEGDRN KENPKSSIST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL  300
VPNSNKTDKA SMLDEVIEYL KQLQAQIQMM SRINMPMMLP MAAMQQQLPM ASLMATPMGL  360
GMGMAGMGMG MALGIDHLNM MATRSSLAAG MSPMLHPTAF MPMAAWDGGT YDQRQPSPST  420
MIADPVSAFL ACQSQPMTME AYSRIATVFQ QMNQQQPTVG GSKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	288	ERKRRD
2	284	289	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-87	bHLH family protein