PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022958875.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 229aa    MW: 23666.8 Da    PI: 8.0829
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022958875.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.6e-39231231100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++ye++ar+rdPvyG+v++i++lq+q+ +l+ael
  XP_022958875.1  23 PCGACKFLRRKCIPGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQRQVVSLQAEL 117
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_022958875.1 118 SYLQAH 123
                     *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSANPSTSGG GGGGGGGGGG GGPCGACKFL RRKCIPGCIF APYFDSEQGA GHFAAVHKVF  60
GASNVSKLLL HIPVHKRLDA VVTICYESQA RLRDPVYGCV AHIFALQRQV VSLQAELSYL  120
QAHLATLELP SPPPPPNFAV QPPVSISDLP SASSLPVTYD LSSLFDPMAQ PAWAMQQQRL  180
DHRQFSSGGA GGSSTTAGEG DLQALARALL HRHGGPPCSD ASSPPSLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-70LBD family protein