PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022959313.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 210aa    MW: 22722.1 Da    PI: 7.0489
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022959313.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.8e-38111111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll+++p ++r da  +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_022959313.1  11 PCGACKLLRRKCVKGCIFAPYFDSEQgAADFAAVHKVFGASNASKLLHRIPANKRVDACGTLCYEALARVRDPVYGCVAHIFSLQQQVVSLQAEL 105
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_022959313.1 106 AYIQAK 111
                     *99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSAGVHGGG PCGACKLLRR KCVKGCIFAP YFDSEQGAAD FAAVHKVFGA SNASKLLHRI  60
PANKRVDACG TLCYEALARV RDPVYGCVAH IFSLQQQVVS LQAELAYIQA KLSTLQRLLP  120
PPLHSPSSTA RHNPLPETTP GSDMGLLPNV RMLLDPLQTQ LGCNETTSSF LNPIDLEDEM  180
EEDGELQSLA REFVSRYLPG VGFRPPCSQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.14e-57LBD family protein