PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022959621.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 307aa MW: 34152.5 Da PI: 8.6757

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022959621.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.8	1.8e-39	53	129	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_022959621.1 53 CMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 129 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MYLRLRGIGH MGEGSMDDIE GTRVTLIESL SSSSSRLTKR SRTPYNGPQV PSCMVDGCSS 60 DLSKCRDYHR RHKVCEFHSK TPKVTICGRE QRFCQQCSRF HSLVEFDDRK RSCRKRLDGH 120 NRRRRKPQPA TITLNAGRFL YSNQGPRFLP FGNQLLSTGN DLSSSWIGMI KPEHNDALCS 180 SNSQLDIADR RKSMFPGLSG CDYKEKQPPF LNVGSNNVGN VQKVVGNGCA LSLLSTPVEA 240 GEINNLTSMV QSNLIPSSHF VHSDGLGFES DLVSPRLVSD GSSDANIRCY SMFEDGPDGS 300 SIDLFRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	126	RKRSCRKRLDGHNRRRRK
2	109	127	RKRSCRKRLDGHNRRRRKP
3	110	128	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	9e-46	SBP family protein