PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022959623.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 297aa MW: 32955 Da PI: 8.4313

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022959623.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.9	1.7e-39	43	119	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_022959623.1 43 CMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 119 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MGEGSMDDIE GTRVTLIESL SSSSSRLTKR SRTPYNGPQV PSCMVDGCSS DLSKCRDYHR 60 RHKVCEFHSK TPKVTICGRE QRFCQQCSRF HSLVEFDDRK RSCRKRLDGH NRRRRKPQPA 120 TITLNAGRFL YSNQGPRFLP FGNQLLSTGN DLSSSWIGMI KPEHNDALCS SNSQLDIADR 180 RKSMFPGLSG CDYKEKQPPF LNVGSNNVGN VQKVVGNGCA LSLLSTPVEA GEINNLTSMV 240 QSNLIPSSHF VHSDGLGFES DLVSPRLVSD GSSDANIRCY SMFEDGPDGS SIDLFRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	116	RKRSCRKRLDGHNRRRRK
2	99	117	RKRSCRKRLDGHNRRRRKP
3	100	118	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-46	SBP family protein