PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022959894.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 182aa    MW: 19805.5 Da    PI: 6.49
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022959894.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.11.1e-36101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ++  +++f +vhk+FGasn +kll++lp ++r+ a+ ++ yeA+ar++dP+yG+++ i++lq+q+ +l+a++
  XP_022959894.1  10 PCGACKFLRRKCVNGCIFAPYFRHDLgASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQV 104
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+l+e+
  XP_022959894.1 105 AYLREQ 110
                     *99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MAASSSSSPP CGACKFLRRK CVNGCIFAPY FRHDLGASHF SAVHKVFGAS NASKLLAHLP  60
VSHRSLAAVT ISYEAQARLQ DPIYGCISQI FALQHQVVNL RAQVAYLREQ AAQIILNGYI  120
TRNPNELLYG NSLSYSDEEL LDLQTWLLEE SCSTAAPEFE PTAGPYVQMG VADSNLAGDF  180
CC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-57LBD family protein