PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022960182.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 530aa MW: 57695 Da PI: 5.3859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022960182.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.5	3.7e-16	319	365	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+k Lq XP_022960182.1 319 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 365 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MLGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSMPDDD VVELLWQNGQ VVAHSQNQRS 60 VRKSPPSKFD VSIPQDQTAA VATREIRPSS QLEEPHDLFM QEDEMASWLN YPLVEDHNFC 120 SDLLFPSMTA SLCGNSQTEP RPSATATVTL TQGPPTRPEK QSSVQFSRNR ATVESEPSNS 180 KAMVREATVV DSCDTPSVGP ESRASEIARR KLAEAVNGAD VWRETVCGSD GGGGASVSGD 240 GVGEKELVTC EMTVTSSPGG SSASAEPAAP KLAADDRKRK GRAPDDTECQ SEDVEYESTD 300 PKKQLRGSTS MKRSRAAEVH NLSERRRRDR INEKMKALQE LIPRCNKTDK ASMLDEAIEY 360 LKTLQLQVQM MSMGCGMMPM MFPGVQQYLP PPMGMGIGMG MGMGMEMGMN RPMMQFPNLL 420 AGSNLPMQAG AAAAAAHLGQ RFPLPAFAMP PVTGSNPSQA QAMNNQPDPI VNPAGTQNTT 480 PPPVSGFPDS YQQFLSSNQV QFHIAQAVQN QQPVQPNTSR PCTDRNPKNL

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MLGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSMPDDD VVELLWQNGQ VVAHSQNQRS  60
VRKSPPSKFD VSIPQDQTAA VATREIRPSS QLEEPHDLFM QEDEMASWLN YPLVEDHNFC  120
SDLLFPSMTA SLCGNSQTEP RPSATATVTL TQGPPTRPEK QSSVQFSRNR ATVESEPSNS  180
KAMVREATVV DSCDTPSVGP ESRASEIARR KLAEAVNGAD VWRETVCGSD GGGGASVSGD  240
GVGEKELVTC EMTVTSSPGG SSASAEPAAP KLAADDRKRK GRAPDDTECQ SEDVEYESTD  300
PKKQLRGSTS MKRSRAAEVH NLSERRRRDR INEKMKALQE LIPRCNKTDK ASMLDEAIEY  360
LKTLQLQVQM MSMGCGMMPM MFPGVQQYLP PPMGMGIGMG MGMGMEMGMN RPMMQFPNLL  420
AGSNLPMQAG AAAAAAHLGQ RFPLPAFAMP PVTGSNPSQA QAMNNQPDPI VNPAGTQNTT  480
PPPVSGFPDS YQQFLSSNQV QFHIAQAVQN QQPVQPNTSR PCTDRNPKNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	329	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	6e-67	bHLH family protein