PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022960926.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 571aa MW: 63679.9 Da PI: 6.7556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022960926.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.2e-13	395	440	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ L++llP+ +K +K ++L+ + eY++sL XP_022960926.1 395 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSSL 440 58899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSKS LISLSLPLLS LLYFLLGFGH 60 FVLMGFGCFM DMTCSCLRFL DGLCVQEIEV QTCSSSAGSL AQLLFEEYRQ LEFSVEDGLV 120 PGLAHKHNDP CLKLEDSQLQ TYASADIQRQ FYLAARIQAS IFLGSINGEI ELGFSNVSQV 180 DMQMIINLLP GDVVGPKIPL ELPQPATKLK LIPSPSLSPI PNPNQLSSST SSLRSQSMDS 240 PAECSSLLLN AIQTTPHITE PFTADIPILP SQHQHSMDSI FAQARNLQFP TPEALDEAMT 300 RTILAVLSSP AGSSSSSMHK TLEGMITPSY HLNVKASAFK KYARVQTPTT ARLNQNLSTR 360 QSLLKRSLAF MRNLNLMRLR ERMPTASRPT TSQLHHVISE RRRREKLNDS FQALKSLLPP 420 GTKKDKGSVL TTTREYMSSL KAQVAELSRR NQQLEAQLLQ SAKEEETSVF SQEERFRVGI 480 SQVSESTSEG QIIDLHITTR GESPLTDMVI GVLEFLKPLN NVRVVSMEGN TQLTPSSSTN 540 HLTLRLIIEE NEWDESAFRE AVERVVSDLA R

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSKS LISLSLPLLS LLYFLLGFGH  60
FVLMGFGCFM DMTCSCLRFL DGLCVQEIEV QTCSSSAGSL AQLLFEEYRQ LEFSVEDGLV  120
PGLAHKHNDP CLKLEDSQLQ TYASADIQRQ FYLAARIQAS IFLGSINGEI ELGFSNVSQV  180
DMQMIINLLP GDVVGPKIPL ELPQPATKLK LIPSPSLSPI PNPNQLSSST SSLRSQSMDS  240
PAECSSLLLN AIQTTPHITE PFTADIPILP SQHQHSMDSI FAQARNLQFP TPEALDEAMT  300
RTILAVLSSP AGSSSSSMHK TLEGMITPSY HLNVKASAFK KYARVQTPTT ARLNQNLSTR  360
QSLLKRSLAF MRNLNLMRLR ERMPTASRPT TSQLHHVISE RRRREKLNDS FQALKSLLPP  420
GTKKDKGSVL TTTREYMSSL KAQVAELSRR NQQLEAQLLQ SAKEEETSVF SQEERFRVGI  480
SQVSESTSEG QIIDLHITTR GESPLTDMVI GVLEFLKPLN NVRVVSMEGN TQLTPSSSTN  540
HLTLRLIIEE NEWDESAFRE AVERVVSDLA R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	400	405	ERRRRE
2	401	406	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-51	bHLH family protein