PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022960928.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 535aa MW: 59709 Da PI: 6.7203

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022960928.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.5e-13	359	404	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ L++llP+ +K +K ++L+ + eY++sL XP_022960928.1 359 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSSL 404 58899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSNC LRFLDGLCVQ EIEVQTCSSS 60 AGSLAQLLFE EYRQLEFSVE DGLVPGLAHK HNDPCLKLED SQLQTYASAD IQRQFYLAAR 120 IQASIFLGSI NGEIELGFSN VSQVDMQMII NLLPGDVVGP KIPLELPQPA TKLKLIPSPS 180 LSPIPNPNQL SSSTSSLRSQ SMDSPAECSS LLLNAIQTTP HITEPFTADI PILPSQHQHS 240 MDSIFAQARN LQFPTPEALD EAMTRTILAV LSSPAGSSSS SMHKTLEGMI TPSYHLNVKA 300 SAFKKYARVQ TPTTARLNQN LSTRQSLLKR SLAFMRNLNL MRLRERMPTA SRPTTSQLHH 360 VISERRRREK LNDSFQALKS LLPPGTKKDK GSVLTTTREY MSSLKAQVAE LSRRNQQLEA 420 QLLQSAKEEE TSVFSQEERF RVGISQVSES TSEGQIIDLH ITTRGESPLT DMVIGVLEFL 480 KPLNNVRVVS MEGNTQLTPS SSTNHLTLRL IIEENEWDES AFREAVERVV SDLAR

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSNC LRFLDGLCVQ EIEVQTCSSS  60
AGSLAQLLFE EYRQLEFSVE DGLVPGLAHK HNDPCLKLED SQLQTYASAD IQRQFYLAAR  120
IQASIFLGSI NGEIELGFSN VSQVDMQMII NLLPGDVVGP KIPLELPQPA TKLKLIPSPS  180
LSPIPNPNQL SSSTSSLRSQ SMDSPAECSS LLLNAIQTTP HITEPFTADI PILPSQHQHS  240
MDSIFAQARN LQFPTPEALD EAMTRTILAV LSSPAGSSSS SMHKTLEGMI TPSYHLNVKA  300
SAFKKYARVQ TPTTARLNQN LSTRQSLLKR SLAFMRNLNL MRLRERMPTA SRPTTSQLHH  360
VISERRRREK LNDSFQALKS LLPPGTKKDK GSVLTTTREY MSSLKAQVAE LSRRNQQLEA  420
QLLQSAKEEE TSVFSQEERF RVGISQVSES TSEGQIIDLH ITTRGESPLT DMVIGVLEFL  480
KPLNNVRVVS MEGNTQLTPS SSTNHLTLRL IIEENEWDES AFREAVERVV SDLAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	364	369	ERRRRE
2	365	370	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	8e-52	bHLH family protein