PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022961163.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family Trihelix
Protein Properties Length: 531aa    MW: 61267.6 Da    PI: 8.2062
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022961163.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.12.6e-14113174167
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                     +W+++e laL+++r+++++ + ++      We+vs+k+ e gf+r++++Ckek+e+  +++  i+ +
  XP_022961163.1 113 QWSNDELLALLTIRSNIDNCFHES-----TWEHVSRKLGEVGFRRTAEKCKEKFEEETRYFNHINYH 174
                     7******************99998.....9*******************************998866 PP
2trihelix91.68.2e-29413500186
        trihelix   1 rWtkqevlaLiearremeerlr...rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++evlaL+++r ++  +     +++ k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql 
  XP_022961163.1 413 RWPRDEVLALVNVRCSLYGNGVgdrDQSGKAPLWERISQGMLQMGYKRSAKRCKEKWENINKYFRKTKDVNKKR-ALDSRTCPYFHQLS 500
                     8*************9876655423246799*******************************************8.8999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MFEGSVSEQL HQFLTPRTPP PPPPSPPPPP PPNPNSLPLP LNFALHSPNF NFHPFDSYHS  60
TTTHQIYLHH DLFHQKDDET RTTTSTGNLQ VAMDLDVGRS ILMDDHHHHH HRQWSNDELL  120
ALLTIRSNID NCFHESTWEH VSRKLGEVGF RRTAEKCKEK FEEETRYFNH INYHPHHPNQ  180
DRDRDRDRDH LPLIHTENGK PDDGKADIVV PEVQEGSKND ETIASKKRKR KTRTKFELLK  240
GYCEEIVKNM MIQQEEIHSK LLDDMLKREE EKIAKEECWK KQQMERLHKE LEVMAYEQAI  300
ASDRQATIIQ ILNQITNSST FSSSSSQKEL QNLLKTLNYN HNNLPNSPSS SSLIQTHSSP  360
NKEHPQIDPK NPKNPCLSTK ILAPQDPNSL INHSNPPPSS PTSPKPRDDL GKRWPRDEVL  420
ALVNVRCSLY GNGVGDRDQS GKAPLWERIS QGMLQMGYKR SAKRCKEKWE NINKYFRKTK  480
DVNKKRALDS RTCPYFHQLS TLYNQGGGNE HPEKCSIVSS ENLSNQSKIT K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KKRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.17e-73Trihelix family protein