PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022961216.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 353aa MW: 39824.7 Da PI: 9.2919

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022961216.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.6	1.2e-24	100	143	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk+++ XP_022961216.1 100 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVD 143 79***************************************986 PP
2	QLQ	57.5	4.2e-20	8	43	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT aQ+q+L++Q+l++Ky+++++P+Pp+Ll+ i++ XP_022961216.1 8 PFTSAQWQELENQALVFKYMVSGVPIPPDLLFSIKR 43 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MSARSMFPFT SAQWQELENQ ALVFKYMVSG VPIPPDLLFS IKRSTLESPF TSKLFPHHSQ 60 HGISTSLSLS LLLSLSLSEM FVFHAVGWNC LQMSLGRKID PEPGRCRRTD GKKWRCSKEA 120 YPDSKYCERH MHRGKNRSRK PVDVLKTTAT NELNHLSSQA FSSLNKNSSL HSYRPFPAPQ 180 MSSNPNGNGI STKDTNTLLL LDPGSYSDRG PDYRYTYGLK EEVDEHVFFS QEPSEATARA 240 DFSASSTVDS LQLTPLTMSC SSLYPKQNNF SSLQSGQSCY QLHQSLTDPL KQQKREESQK 300 KVHRFFDEWP QKGGSWLDFN DKSSNIGSVS TTRLSISIPT ASNELPIFRS KNP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MSARSMFPFT SAQWQELENQ ALVFKYMVSG VPIPPDLLFS IKRSTLESPF TSKLFPHHSQ  60
HGISTSLSLS LLLSLSLSEM FVFHAVGWNC LQMSLGRKID PEPGRCRRTD GKKWRCSKEA  120
YPDSKYCERH MHRGKNRSRK PVDVLKTTAT NELNHLSSQA FSSLNKNSSL HSYRPFPAPQ  180
MSSNPNGNGI STKDTNTLLL LDPGSYSDRG PDYRYTYGLK EEVDEHVFFS QEPSEATARA  240
DFSASSTVDS LQLTPLTMSC SSLYPKQNNF SSLQSGQSCY QLHQSLTDPL KQQKREESQK  300
KVHRFFDEWP QKGGSWLDFN DKSSNIGSVS TTRLSISIPT ASNELPIFRS KNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-52	GRF family protein