PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022961385.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 388aa MW: 42865.2 Da PI: 6.8465

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022961385.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	84	127	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_022961385.1 84 RGPFSQQEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 127 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MKMKSFSIIS PSMAMAVGAL SLNSLVPINI IPFSFSIHTN LSLSLSLSLS LTSPLPSSFL 60 LGLQRCGKSC RLRWINYLRP DLKRGPFSQQ EEDLIIELHA VLGNRWSQIA AQLPGRTDNE 120 IKNLWNSCIK KKLRQKGIDP NTHKPVCVSA DVDNESENNK VPATPTSHRS NDNSSDEATN 180 NATETIPLPI IANPHNSNSQ IFSQTPQDFF RFQTSTTNTP SEMVDYLSFH HLNYAPSRIP 240 NPNPNSLCFN LPPPPIPTKP QVPTWEGTTF TGGVGGNNHF YDASNFSWGG LPDCAKSEKL 300 NPTAIPEDIK WSEFVGNPYM VMGNAAAAVQ NQEFQFQTEP MYVENISRGT AAETGFITEA 360 GWQRQQASSD AVYNKHLHTL TVSFGNTL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MKMKSFSIIS PSMAMAVGAL SLNSLVPINI IPFSFSIHTN LSLSLSLSLS LTSPLPSSFL  60
LGLQRCGKSC RLRWINYLRP DLKRGPFSQQ EEDLIIELHA VLGNRWSQIA AQLPGRTDNE  120
IKNLWNSCIK KKLRQKGIDP NTHKPVCVSA DVDNESENNK VPATPTSHRS NDNSSDEATN  180
NATETIPLPI IANPHNSNSQ IFSQTPQDFF RFQTSTTNTP SEMVDYLSFH HLNYAPSRIP  240
NPNPNSLCFN LPPPPIPTKP QVPTWEGTTF TGGVGGNNHF YDASNFSWGG LPDCAKSEKL  300
NPTAIPEDIK WSEFVGNPYM VMGNAAAAVQ NQEFQFQTEP MYVENISRGT AAETGFITEA  360
GWQRQQASSD AVYNKHLHTL TVSFGNTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	8e-55	MYB family protein