PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022961386.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 371aa MW: 41513.4 Da PI: 7.3126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022961386.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l+++++++G g+W+++++ g+ R++k+c++rw +yl XP_022961386.1 14 KGLWSPDEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.8	1.4e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_022961386.1 67 RGPFSQQEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPVC VSADVDNESE NNKVPATPTS HRSNDNSSDE ATNNATETIP LPIIANPHNS 180 NSQIFSQTPQ DFFRFQTSTT NTPSEMVDYL SFHHLNYAPS RIPNPNPNSL CFNLPPPPIP 240 TKPQVPTWEG TTFTGGVGGN NHFYDASNFS WGGLPDCAKS EKLNPTAIPE DIKWSEFVGN 300 PYMVMGNAAA AVQNQEFQFQ TEPMYVENIS RGTAAETGFI TEAGWQRQQA SSDAVYNKHL 360 HTLTVSFGNT L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPVC VSADVDNESE NNKVPATPTS HRSNDNSSDE ATNNATETIP LPIIANPHNS  180
NSQIFSQTPQ DFFRFQTSTT NTPSEMVDYL SFHHLNYAPS RIPNPNPNSL CFNLPPPPIP  240
TKPQVPTWEG TTFTGGVGGN NHFYDASNFS WGGLPDCAKS EKLNPTAIPE DIKWSEFVGN  300
PYMVMGNAAA AVQNQEFQFQ TEPMYVENIS RGTAAETGFI TEAGWQRQQA SSDAVYNKHL  360
HTLTVSFGNT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-91	MYB family protein