PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022961645.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family YABBY
Protein Properties Length: 197aa    MW: 21846.8 Da    PI: 6.9391
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022961645.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY184.55.5e-57111785166
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees.ast 94 
                     + seq+ yvqC+ C+til+v+vP++ l++vv vrCG Ct llsvn+ak s     ll++ sh   +l +e  ++l+v+++ +  n  + +   ++
  XP_022961645.1  11 DPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSfipfDLLTSLSH---NLPKEPFQDLNVQKHLCLDNRNNASDlLTS 102
                     579********************************************998655555555555...565555566665555444333333220222 PP

           YABBY  95 svssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                     +++  +     ++++   +p +p v++PPek+qr+Psayn+fikeei+r+ka+nP ++h+eaf +aaknWah+P++
  XP_022961645.1 103 YHNIIQNheddDDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPV 178
                     2222211221122223334555669*************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MSSTLEHLLP DPSEQIRYVQ CGLCSTILLV NVPYSNLSMV VSVRCGNCTG LLSVNMAKPS  60
FIPFDLLTSL SHNLPKEPFQ DLNVQKHLCL DNRNNASDLL TSYHNIIQNH EDDDDDDAII  120
IPPTPVVNKP PEKKQRAPSA YNQFIKEEIR RLKAENPGMA HKEAFKTAAK NWAHLPPVNG  180
EGDHVGSGRK GKSLISN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-51YABBY family protein