PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022962306.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 944aa MW: 105180 Da PI: 5.257

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022962306.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.8e-18	38	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_022962306.1 38 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799**************************9.**********986 PP
2	Myb_DNA-binding	65.6	9.1e-21	90	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_022962306.1 90 KGPWSKEEDETIVELVQKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136 79****************************.***********97 PP
3	Myb_DNA-binding	48.7	1.7e-15	142	184	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_022962306.1 142 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 184 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence
MESDPPVCTR SDVPGDSGRS IQALHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDET IVELVQKYGP KKWSTIAQHL 120 PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LDSYLASGLL EQYQPLHHHA LQSSLPILSS SRVQSSIDDS CLRGTETEDI 240 SEVTQTSATV PRTKEECQLA EDVLIKEETN STPHCLEQYH GSLDDITFSI PEMLRELGCY 300 AKPPNQNLSQ DCRTSSTGDN QYNLYELPNI SSLELGQELP QFQAIGSQEA ENISHQTSAG 360 LSASTVENMD RASDKPEHML ISDYECCRVL FSDAINNESF LSESTTDARD MVEPSGYAHP 420 LQCRSSCTEM PESNRNLSLQ SEVLDNSCSE RFLAPLLVSA HDDTYVYTSE TSHLFESLEQ 480 ELVGDGQNGF IYTNESANSP PNDGLKNTEL HKQQGSKDSS KLVPVNTFSS EPKTAESFPS 540 FSGRENTHSD QQDLRALCYE PPRFPSLDVP FLSCDLAPSA SDMQQEYSPL GIRQLMMSSM 600 NCLTPFKPWN SPSRDDSPIA VLKSAAKTFT NTPSILKKRH RELLSPLSEK RCDKKQEIDV 660 GISRTSQSNP INSRNSEDKE NISPDSCSFQ ENKMQELVGQ IVQQPSRILV ECDSNDEISE 720 IPCSRTSTAL QDQEFPKFSN DHCAVANCSV AGTSHGSRPP TATVPPEVIG DNASKESSIE 780 PATIFGGTPF NRSIESPSAW KSPWFINSFL FGSRMDTDVP MEEVGYLMSP GDRSYDAIGL 840 MKQVGEHTAA ACANAQEVLG NETPQSLLKG RRGKYENQNK EKSHLSNSLQ GVRSTLTLDI 900 MTERRILDFS ECGTPGKATE NGKSSTATAR SFSSPSSYLL KGCR

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence

MESDPPVCTR SDVPGDSGRS IQALHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDET IVELVQKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDSYLASGLL EQYQPLHHHA LQSSLPILSS SRVQSSIDDS CLRGTETEDI  240
SEVTQTSATV PRTKEECQLA EDVLIKEETN STPHCLEQYH GSLDDITFSI PEMLRELGCY  300
AKPPNQNLSQ DCRTSSTGDN QYNLYELPNI SSLELGQELP QFQAIGSQEA ENISHQTSAG  360
LSASTVENMD RASDKPEHML ISDYECCRVL FSDAINNESF LSESTTDARD MVEPSGYAHP  420
LQCRSSCTEM PESNRNLSLQ SEVLDNSCSE RFLAPLLVSA HDDTYVYTSE TSHLFESLEQ  480
ELVGDGQNGF IYTNESANSP PNDGLKNTEL HKQQGSKDSS KLVPVNTFSS EPKTAESFPS  540
FSGRENTHSD QQDLRALCYE PPRFPSLDVP FLSCDLAPSA SDMQQEYSPL GIRQLMMSSM  600
NCLTPFKPWN SPSRDDSPIA VLKSAAKTFT NTPSILKKRH RELLSPLSEK RCDKKQEIDV  660
GISRTSQSNP INSRNSEDKE NISPDSCSFQ ENKMQELVGQ IVQQPSRILV ECDSNDEISE  720
IPCSRTSTAL QDQEFPKFSN DHCAVANCSV AGTSHGSRPP TATVPPEVIG DNASKESSIE  780
PATIFGGTPF NRSIESPSAW KSPWFINSFL FGSRMDTDVP MEEVGYLMSP GDRSYDAIGL  840
MKQVGEHTAA ACANAQEVLG NETPQSLLKG RRGKYENQNK EKSHLSNSLQ GVRSTLTLDI  900
MTERRILDFS ECGTPGKATE NGKSSTATAR SFSSPSSYLL KGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein