PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022962461.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 645aa MW: 69484.6 Da PI: 8.1067

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022962461.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2.1e-24	239	283	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_022962461.1 239 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVES 283 79****************************************986 PP
2	QLQ	62.4	1.2e-21	170	205	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k XP_022962461.1 170 PFTPSQWMELEHQALIYKYITANVPVPSNLLIPIRK 205 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MDFGVVGLDG VVVGSSHDTS GFSSLASSDP ETKQKWYESG VGFLQKQERS GSGAAAEDED 60 LRSSKLPKTY DDLSSSSSSI KGLLFPHRQV ASLLRSNSPF FLSDSNQHPH QMLCFSSPKT 120 DPFPPDKTSS LSRVSPNFYH SSAPRNAGCN YGGLNGGSMN VSGFIGVRAP FTPSQWMELE 180 HQALIYKYIT ANVPVPSNLL IPIRKALESA GFSAYSAGFL RPGAVGWGSF NMGFSNNSDP 240 EPGRCRRTDG KKWRCSRDAV ADQKYCERHM NRGRHRSRKP VESQAGHSHS VARASNITTA 300 ANATKLISSS ASAAAVPSNA SSNTLSFADQ HFKNLQCAES HPPPSTTAQI NRMLITNKEN 360 GSIALHDTPT TSGFSVLSPS IEMKQQPKQL PFAVQKQQNP FEESTRAEFG LVSSNFLLNQ 420 SQKASSLMNY RGYNSSEGIS STHEAAETQH SLRQFFNNWP KNQSDSSSVS WSNSNLDLQS 480 DRTQLSISIP MATSDFRSST SSPANEKVTL SPLKSLQEMD PLQMGLGVGN VMDEPNNRQA 540 NWIPISWESS MGGPLGEVLH STNNIGGELK SSSILNLMTE GWDNNSPSLG SSPTGVLQKT 600 AFGSFSNSST GSSPRTENNK THEGGGGSSQ CSDRFVNSSS SLPSV

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MDFGVVGLDG VVVGSSHDTS GFSSLASSDP ETKQKWYESG VGFLQKQERS GSGAAAEDED  60
LRSSKLPKTY DDLSSSSSSI KGLLFPHRQV ASLLRSNSPF FLSDSNQHPH QMLCFSSPKT  120
DPFPPDKTSS LSRVSPNFYH SSAPRNAGCN YGGLNGGSMN VSGFIGVRAP FTPSQWMELE  180
HQALIYKYIT ANVPVPSNLL IPIRKALESA GFSAYSAGFL RPGAVGWGSF NMGFSNNSDP  240
EPGRCRRTDG KKWRCSRDAV ADQKYCERHM NRGRHRSRKP VESQAGHSHS VARASNITTA  300
ANATKLISSS ASAAAVPSNA SSNTLSFADQ HFKNLQCAES HPPPSTTAQI NRMLITNKEN  360
GSIALHDTPT TSGFSVLSPS IEMKQQPKQL PFAVQKQQNP FEESTRAEFG LVSSNFLLNQ  420
SQKASSLMNY RGYNSSEGIS STHEAAETQH SLRQFFNNWP KNQSDSSSVS WSNSNLDLQS  480
DRTQLSISIP MATSDFRSST SSPANEKVTL SPLKSLQEMD PLQMGLGVGN VMDEPNNRQA  540
NWIPISWESS MGGPLGEVLH STNNIGGELK SSSILNLMTE GWDNNSPSLG SSPTGVLQKT  600
AFGSFSNSST GSSPRTENNK THEGGGGSSQ CSDRFVNSSS SLPSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-91	GRF family protein