PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022962555.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 177aa    MW: 20289.4 Da    PI: 9.0775
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022962555.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.91.8e-3428124197
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkC++dC+lapyfpae+ ++f+nv+klFG++nvlk+l +l++++r+da++++++eA++ra+d   G++++i k+q+++  l+a+  
  XP_022962555.1  28 ACAACKFQRRKCTADCPLAPYFPAERFREFRNVRKLFGVKNVLKTLGDLEPSKRRDAVQCIIFEANCRASDLAGGCYKIIAKMQREITLLEAQHR 122
                     7****************************************************************************************999987 PP

          DUF260  96 ll 97 
                     l+
  XP_022962555.1 123 LV 124
                     76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MNIHRDFSGI VAGVDADYKN QNPPTMQACA ACKFQRRKCT ADCPLAPYFP AERFREFRNV  60
RKLFGVKNVL KTLGDLEPSK RRDAVQCIIF EANCRASDLA GGCYKIIAKM QREITLLEAQ  120
HRLVLRQLRF YRQTAACAIR SEFDFDFEDR IRKESCSLNE RLTARENGVC CSKGVTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-33LBD family protein