PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022962645.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 169aa MW: 19728.2 Da PI: 6.9641

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022962645.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.2e-19	14	67	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +f+++qle Le+ F+++ ++ e++ +L+k++gL+ rq+ vWFqNrRa+ k XP_022962645.1 14 KKKRFSRDQLESLERSFQEEVKLEPERKMKLSKEIGLQPRQIAVWFQNRRARSK 67 5678************************************************98 PP
2	HD-ZIP_I/II	108.9	3.5e-35	13	105	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+r+s++q+++LE+sF+ee kLeperK++l++e+glqprq+avWFqnrRAR k kql + y++Lk+++da++ e+ L+++v+eLr+ l+e XP_022962645.1 13 EKKKRFSRDQLESLERSFQEEVKLEPERKMKLSKEIGLQPRQIAVWFQNRRARSKVKQLQHLYDTLKQEFDAISMEKLDLQQQVRELRSMLRE 105 69**************************************************************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MEAQESRVGG VDEKKKRFSR DQLESLERSF QEEVKLEPER KMKLSKEIGL QPRQIAVWFQ 60 NRRARSKVKQ LQHLYDTLKQ EFDAISMEKL DLQQQVRELR SMLREQAVRN HGSMAYMTVS 120 EEEAAESTAE GVRSWNNHIF NVENVDQISA SSIPSLWSCS QAAHLPYYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	43	KKKRFSRDQLESLERSFQEEVKLEPERKMK
2	62	70	RRARSKVKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-39	HD-ZIP family protein